Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01723 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCCAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAAGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTACCTCTTCTGCCATGATAGGCCGCAACATGAATGAGATGCAAATAGAGGTGCAGAGAAGATTGCATGAGCAACTTGAGGTTCAAAAACACCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCATCTGCTGCCACTAACTTAAAGGGTTCTATTGTACCTCATCAAAGCATCCCTGATATGGGAGTGTTGAAGGAGTTTGGTTCCCCTCTTGGTTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGCGGTGACCAAATTGACCTTCAGCACAACATGGAGAAACCAACCCTTGATCATGGGTTTATGCCAATCAATGAGAGTTTGTGTCTGGGGAAGAAGAGGTCCAACCCTTATAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTTCAAGATCTGGGAGGGCCAGCCTCATCTTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGTGACCAGATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACTGACATTGATCCCATGTCAGAGATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTAGTGGGGGAAAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCACCTCTTCAGGCTGAAAGGATGAGTCCTATGATCAGTACTGGTACCATGGCACAAGGCATATATAACACGGAATTTAGAAAGATAGAGCAGTGCAACATAGCCATAGAAAGCATCAAAACCTTAAAAGCCAGTGGAGTTGATGACTGCAATTTGAAACTGTGGAACTAG 1209 0.4582 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTATSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGSIVPHQSIPDMGVLKEFGSPLGFSSFQDLENIYGGDQIDLQHNMEKPTLDHGFMPINESLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQIQITPPGSLDRGSTDIDPMSEIYDSKPVLQGEAVVGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGIYNTEFRKIEQCNIAIESIKTLKASGVDDCNLKLWN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01723 402 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Spst5g01723 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 194 IPR044848 GO:0003700
Spst5g01723 402 MobiDBLite consensus disorder prediction 1 20 - -
Spst5g01723 402 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Spst5g01723 402 FunFam Myb family transcription factor 34 92 - -
Spst5g01723 402 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Spst5g01723 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Spst5g01723 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Spst5g01723 402 Gene3D - 34 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01723 Spst-Chr5 52660902 52664584 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst5g01723 Myb_DNA-binding 2.3e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01723 5 52660902 52664584 Spst5g01723 5 52660902 52664584 ECH
Spst5g01723 5 52660902 52664584 Spst11g00433 11 25037747 25039887 PCT