LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g01720	ATGGCAGCAGCACTGAACCTTGGCCGCATGACACTGCCATCTTCAAAGTTTCTCTCACGTCCTTCCCATCTTCTATCCGTTAAGATGCAGATGCAGATGCAAATGCAATTCTCTTCTCCTACTCTCACCAAGATGAGCACGGATGCTCAGAGTGTTGCTTCCAAGCTTGATAGTTCTGGATTGCTGAGGACTCAGGGCCTTATTGGAGGGAAATGGAGTGATGCTTATGATGGAAAAACCATTAAGGTTTATAATCCAGCAACCGGTGAATCTATTGTAGATGTTGCATGCATGGGTGGAAGAGAGACAAATGATGCAATTTCTGCAGCCTATGATGCATATGGATCATGGAGCAAAATCACTGCTGCTGAAAGAAGCAAGTTTCTGAGGAAATGGTTTGATTTGCTAATGGTACATAAAGAAGAACTTGCACAACTTATAACCTTGGAGCAGGGGAAACCTCTTAAAGAGTCTATTGGTGAGATAAACTATGGGGCTGCATTTATTGAGTTTTCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTTCACCCTTATCTGATCGACGATTATTTGTTCTTAAGCAGCCTGTAGGGGTTGTAGGTGCAATTACACCATGGAACTTTCCCCTTGCTATGATTACTCGTAAGGTTGGTCCAGCCCTTGCATGTGGTTGTACTGTGGTCATAAAACCCTCTGAACTTACACCTCTCACTGCTTTAGCTGCTGCAGAACTCTCCATTCAAGCTGGAATACCAGCGGGTGTCGTGAATGTGGTAATGGGAGATGCTCCTGATATTGGGAACTCTTTACTTGCAAGTCCACAGGTAAGGAAGATCACATTCACAGGCTCGACGGCAGTTGGAAAGAAATTGATGGCTGGTTCAGCTGACACAGTTAAAAAAGTATCTCTGGAACTTGGAGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTATTGCGGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCAAATAGAATTATTGTACAAGAAGGTATATATGATAAATTTGCAAATGCTTTATGTGATGCTATTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGGTGTGGTACAGGGACCTCTAATCAATGAAGCTGCTGTCAAAAAGGTTGAGTCCTTAATTCATGATGCTACATCAAAGGGGGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGATTTACTTTTTATGAACCAACGGTCATCAGTGATGTCGACAGTGAGATGCGCATATCAAGAGAGGAAGCATTTGGACCTGTTGCACCCCTTTTGAGATTCAAAACTGAAGAGGATGCTATCAGGATTGCTAACGACACCAACGCAGGTTTGGGTTCATACGTGTTTACAAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTAGAATATGGCCTTGTGGGTATTAATGAAGGAGTAATTTCAACTGAGGTGGCTCCTTTTGGTGGTGTCAAAGAATCAGGCCTCGGAAGAGAAGGCTCCAAATATGGATTGGATGAATATTTAGAGATGAAATATGTGTGCTTGAGAAACATGAACAAAGAGTGA	1620	0.4265	MAAALNLGRMTLPSSKFLSRPSHLLSVKMQMQMQMQFSSPTLTKMSTDAQSVASKLDSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIVDVACMGGRETNDAISAAYDAYGSWSKITAAERSKFLRKWFDLLMVHKEELAQLITLEQGKPLKESIGEINYGAAFIEFSAEEAKRIYGDIIPSPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGDAPDIGNSLLASPQVRKITFTGSTAVGKKLMAGSADTVKKVSLELGGNAPCIVFDDADLDVAVKGTIAAKFRNSGQTCVCANRIIVQEGIYDKFANALCDAIQNMKVGDGFSEGVVQGPLINEAAVKKVESLIHDATSKGAKVILGGKRHSLGFTFYEPTVISDVDSEMRISREEAFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGINEGVISTEVAPFGGVKESGLGREGSKYGLDEYLEMKYVCLRNMNKE	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst5g01720	539	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	335	346	IPR016160	GO:0016491
	Spst5g01720	539	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	58	535	-	-
	Spst5g01720	539	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	311	500	IPR016163	GO:0016620
	Spst5g01720	539	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	307	314	IPR029510	GO:0016491
	Spst5g01720	539	NCBIfam	succinate-semialdehyde dehydrogenase	83	529	IPR010102	GO:0009013\|GO:0009450
	Spst5g01720	539	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	78	525	IPR016162	GO:0016491
	Spst5g01720	539	FunFam	Aldehyde dehydrogenase, putative	503	529	-	-
	Spst5g01720	539	FunFam	Succinate-semialdehyde dehydrogenase I	78	323	-	-
	Spst5g01720	539	CDD	ALDH_F5_SSADH_GabD	83	533	-	-
	Spst5g01720	539	FunFam	Succinate-semialdehyde dehydrogenase I	311	500	-	-
	Spst5g01720	539	Pfam	Aldehyde dehydrogenase family	74	531	IPR015590	GO:0016491
	Spst5g01720	539	SUPERFAMILY	ALDH-like	61	537	IPR016161	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g01720	Spst-Chr5	52592327	52605897	Dispersed/Transposed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst5g01720	5	52592327	52605897	Spst5g01720	5	52592327	52605897	ECH