Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01702 ATGGCCTCAGCCGCAGCGCCCACCACTTTCTCTCTCCTCCACTCTGCCACCCCCGCCTCCTCCTCCACCGCCTCATCTTCCTCGCGCGTGCAGCTCTCGTCCTCCCTCCGCGTCCGCCCGCTCACGCGCCGCCTCGGGTTCGCCGCGGCGGACCCGGTGCTGGCGGCGAGCGTAGCTGCGCGGGTGGCGGCGGTGAGGGGCGGGAGGGGCCCGAGAGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGCGACCTTAGCGCGGCGGAATTGAAAGGGAAGAAGGTGTTCGTGAGGGCGGACCTTAACGTCCCGCTCGACGACAACCAGAACATCACCGATGACACCAGAATCCGCGCCGCAATTCCCACGATCAAACACCTCATCCAAAATGGCGCCAAAGTCATACTCTCTAGCCACTTGGGGCGACCGAAGGGTGTCACTCCCAAATACAGCTTGGCGCCTCTTGTACCTCGGCTTTCTGAACTCATTGGTATTCCGGTTGTCAAGGCTGAGGATAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGAAGGAGGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAAGAGGAAGAAAAGAATGATCCTGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTTTGTGAATGATGCGTTTGGTACTGCTCATAGGGCACACGCATCAACAGAGGGGGTTACTAAATACTTGAAGCCATCGGTTGCTGGCTTTCTTTTGCAAAAGGAACTTGATTACCTTGTTGGGGCAGTATCAAACCCGAAAAGGCCATTTGCTGCCATCGTTGGCGGTTCCAAGGTCTCATCTAAAATTGGAGTGATTGAGTCACTTTTAGAAAAGGTTGACATTCTTCTTCTAGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTTCCGTGGGTTCTTCCCTTGTAGAGGAAGATAAATTAGATCTTGCTACATCACTACTTGCAAAAGCCAAGGAAAAGGGGGTGTCTCTATTGTTACCAAGTGATGTGGTGATTGCAGACAAATTTGCTCCTGATGCAAACAGCAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATCGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCAAAACCATCATATGGAATGGACCAATGGGAGTTTTTGAATTTGACAAGTTTGCTGTTGGGACAGAGGCTATTGCAAAGAAGCTAGCTGACCTCAGTGGGAAGGGGGTCACCACAATTATTGGGGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTGGGAGTTGCAAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCTGGAGTCCTTGCCCTTGATGAAGCCACACCAGTTCCTGTGTAA 1446 0.5166 MASAAAPTTFSLLHSATPASSSTASSSSRVQLSSSLRVRPLTRRLGFAAADPVLAASVAARVAAVRGGRGPRGVVSMAKKSVGDLSAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIPVVKAEDSIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEHAKKLASLADLFVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKEKGVSLLLPSDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSVKSFSEALDTTKTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEATPVPV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01702 481 FunFam Phosphoglycerate kinase 19 148 - -
Spst5g01702 481 Pfam Phosphoglycerate kinase 87 465 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 Hamap Phosphoglycerate kinase [pgk]. 84 475 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 Gene3D - 49 148 IPR015824 GO:0004618|GO:0006096
Spst5g01702 481 Gene3D - 150 476 IPR015824 GO:0004618|GO:0006096
Spst5g01702 481 Gene3D - 264 451 IPR015824 GO:0004618|GO:0006096
Spst5g01702 481 CDD Phosphoglycerate_kinase 90 475 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 428 439 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 392 417 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 451 468 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 216 238 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 89 105 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 111 133 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 188 203 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 247 269 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PRINTS Phosphoglycerate kinase family signature 270 289 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 PANTHER PHOSPHOGLYCERATE KINASE 79 476 IPR001576 GO:0004618|GO:0006096
Spst5g01702 481 SUPERFAMILY Phosphoglycerate kinase 84 475 IPR036043 GO:0004618|GO:0006096
Spst5g01702 481 FunFam Phosphoglycerate kinase 249 465 - -
Spst5g01702 481 ProSitePatterns Phosphoglycerate kinase signature. 94 104 IPR015911 GO:0004618|GO:0006096
Spst5g01702 481 PIRSF Pgk 75 480 IPR001576 GO:0004618|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01702 Spst-Chr5 52317132 52320372 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01702 5 52317132 52320372 Spst5g01702 5 52317132 52320372 ECH