Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01650 ATGAACCGAGGGATTCACGCGTATCTTTGGTTTATCGAGGGTTTCGTTCCTCCTCTCTGCAACAATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCCGTTTCCGCCGCCTCCTCTTCTCGCTCCTCTTCCCCCTCCGATTCTCGCTCCTCTCGTTCTCGCTCCCGCTCTCCCTCGCGCTCCAGATCTTTCTCGTCGTCCTCCTCCTCTCCCTCCCGAAGCTCCCGCAGCCGCAGCCCTCCGCCGCAGAGGCGCAGAAGGTGCCGTTGATTTCTTCGATCCGAGGTCCCGCTGAAGCAGCTAGGCGTGGTCGGTCTCCTCCACCTCAGTCAAAGAGAGCTTCACCTCCTCCAAGGAAACCGTCTCCTGTAAGAGAATCACTTGTCCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAGGGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAGGGATATGGATATGTGCAGTTCAAGACAAGAGAGAATGCTGAAAAAGCCTTACTGTACATGGATGGTGCCCAAATAGATGGCAATGTTATCAAGGCAAGATTTACACTACCTCCAAGGCAGAAAGTTTCACCACCCCCAAAGGCTTCCGCTGTTGCTCCAAAGAGAGACACCCCCAGGATTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCTAAAGCGTCAAAGAGAATCTCCTCGAAGAAAGCCTCCCTCACCACGGAGGAGATCTCCTATACCTAGAAGAGCTGGATCTCCTAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGACACTCCTCCTAGGAGGCGACCTGTGTCTCCTGGAAGAGGTCGATCTCCATCTCCGCCAAGGCGTCTTAGATCCCCTGCTAGGATCTCACCTAGAAGAATGCGTGGAAGCCCAGGGCGGAGACGTTCACCTCCTCCTCCTCCTCCTCCTCGGCGCCGATCACCACCTAGACGAGCCCGCAGTCCGCCTAGAAGGTCTCCACTTGGTCGTAGACGTACTCGCTCTCCAATGCGTAGGTCTGCACGTTCACGCTCAAGGTCTTTCTCACCTCGCAGAGGTAGGCCACCTGTTAGACGTGGGAGGTCATCATCCTTCTCCGATTCACCAAGTCCACGCAAGGTTTCCCGGAGATCAAAGAGTCGTAGCCCAAGAAGGTCCAAGTTAAATGTTAAAGAAGGCACACACAACGAGACTAAGGTAGCAGGTAGAGTAAGAGATTTCATGGCAGGCAGTGGCCTGCAATCTTTGGGTCGCGTGAAGCTTACTGATTTAGTCCCTTCGGATGGGTTACCATCTGATTCTTATAAAATATCAGTTTCAATTTTGTCACAATCTCTGGCTCAGTTTTCGGCTGTAATCATCCAGTTTCCAGCTAGTGATGGCTCTCTTCTGAGATCTGGTTTAGAATCTGCTCGCCTTTATTTTCACCAAAGGGAAACATACCCACCTGCGGATATCATCCATACTAGCGAGTCTCGTGAATGGTGCAAAACATCTGGTTATTACGCAGATCCTCATTTGTGGCAAGAAACATTTGACTATAGACCAGGATTGACCCCTTCAGAACCTAATAATTCCATAGAGTTACCCCCGGCAGGTTTGTCAGACATATTTGCCTTATTTGGAAAAGCAGCAAGGGATATTCTGGATGCAATTAGCTACCATTTGAATTTGCGCAGTTCTCCATTTGTAGAGATACTGGATAATGTTCCCCTGAGAAATAGGGAAATTTCATCTTCAGTCTTGTCTGTTTGCTGTCACGGAAGGCCATCATTTCAGGGTCCACAGCATCATAGTATAACTTCTCAAGAGGATGGCCAATTGATTATGTATCCTGACCATGATCACCAGGTTGATAAAAGCTTGCTATCGCTTGTTAAGTCTGACAGGGCAGGTCTACATGTAAGAGACTTTCAAGGCCGGTGGATTCTTGTGGATGGAGATCTGGGACCTCAAGAAGCTATTGTTTATCCTGGGCTTGCTCTTTATCAAGCAACTGCAGGATATGTAAACCCTGCATTGCACAAAACTGAGCTTAATATGGAGGCTAATATGTATGGACGATGTTCTTTAGCCTTCAAACTTTTGCCTAAATCAATGACCAGCTTGGATTGTTCTGAAATGCGAGCAGCAGGTTATGGAATTGAAGCACAGTTCCAGCTTCCCGTCCCAGTGGATGATTTTATGCAAAGACCTCATCCAACAGATCATCTCTTTAATCGACCTAGTTTCCAGTGCTTCAATTTCCAACCAACACATGATGGATCTATGAAGACTCTGATGCGGAGAAGGAAGCAATATCCCAAGAGCAAACCTTTGCCACCTTCCAAGAGGTTAAGGCTTGAGGCGCAGAAAGTTTTGAAAGAAAAGGTCCAGGATATTGCAGATAAGAAAGGCATCAAGCTGCGGTTCTGTAATCTCAAGGAATGCGAAAGTCACATTCACAGTGTAGATAGCCCATGTGCAAATATACGAATGGAGATAGGGTGGCCTCTTGGTGTTCCATTTGTCCATCCCCATGATTTACCTAACAAGGCAAAGCTGGGTTTCCTTGAAGCATATGAACCTGGTTGGACAGAAGCCCATCAGAACTCAGGCAGGCTAGTCAACACTCGGCTAATTTTAACTAATATGTTCATAATTTGGTATCTGCAGGAATCAGTCCCCCTGATATCCAACACATGGGCGACATATGATCAGGTTGTGAAGATAGGCCTATATAGTCCTCAAGAGGGCTCTGAACCTATTTGTAGCTAG 2865 0.4813 MNRGIHAYLWFIEGFVPPLCNNGETWARSSLSLRFRFRRLLFSLLFPLRFSLLSFSLPLSLALQIFLVVLLLSLPKLPQPQPSAAEAQKVPLISSIRGPAEAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRENAEKALLYMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKRDTPRIDNASADVDKDGLKRQRESPRRKPPSPRRRSPIPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARISPRRMRGSPGRRRSPPPPPPPRRRSPPRRARSPPRRSPLGRRRTRSPMRRSARSRSRSFSPRRGRPPVRRGRSSSFSDSPSPRKVSRRSKSRSPRRSKLNVKEGTHNETKVAGRVRDFMAGSGLQSLGRVKLTDLVPSDGLPSDSYKISVSILSQSLAQFSAVIIQFPASDGSLLRSGLESARLYFHQRETYPPADIIHTSESREWCKTSGYYADPHLWQETFDYRPGLTPSEPNNSIELPPAGLSDIFALFGKAARDILDAISYHLNLRSSPFVEILDNVPLRNREISSSVLSVCCHGRPSFQGPQHHSITSQEDGQLIMYPDHDHQVDKSLLSLVKSDRAGLHVRDFQGRWILVDGDLGPQEAIVYPGLALYQATAGYVNPALHKTELNMEANMYGRCSLAFKLLPKSMTSLDCSEMRAAGYGIEAQFQLPVPVDDFMQRPHPTDHLFNRPSFQCFNFQPTHDGSMKTLMRRRKQYPKSKPLPPSKRLRLEAQKVLKEKVQDIADKKGIKLRFCNLKECESHIHSVDSPCANIRMEIGWPLGVPFVHPHDLPNKAKLGFLEAYEPGWTEAHQNSGRLVNTRLILTNMFIIWYLQESVPLISNTWATYDQVVKIGLYSPQEGSEPICS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01650 954 MobiDBLite consensus disorder prediction 100 128 - -
Spst5g01650 954 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 444 895 - -
Spst5g01650 954 SUPERFAMILY RNA-binding domain, RBD 117 215 IPR035979 GO:0003676
Spst5g01650 954 SMART rrm1_1 131 204 IPR000504 GO:0003723
Spst5g01650 954 Gene3D - 91 214 IPR012677 -
Spst5g01650 954 MobiDBLite consensus disorder prediction 251 266 - -
Spst5g01650 954 CDD RRM_RNPS1 132 204 IPR034201 -
Spst5g01650 954 Gene3D - 503 769 IPR027443 -
Spst5g01650 954 MobiDBLite consensus disorder prediction 421 435 - -
Spst5g01650 954 MobiDBLite consensus disorder prediction 230 250 - -
Spst5g01650 954 MobiDBLite consensus disorder prediction 270 300 - -
Spst5g01650 954 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Spst5g01650 954 MobiDBLite consensus disorder prediction 349 394 - -
Spst5g01650 954 FunFam Serine/arginine-rich splicing factor SR45 80 215 - -
Spst5g01650 954 MobiDBLite consensus disorder prediction 207 435 - -
Spst5g01650 954 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01650 Spst-Chr5 51381229 51392915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01650 127 199 Eukaryotic Initiation Factors Gene Family AT1G34140 38.356 3.97e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01650 5 51381229 51392915 Spst5g01650 5 51381229 51392915 ECH