Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01643 ATGACCATGACTAATAATTATTTTTGGATGGACATGAAGATATTAGATGAGGGTATGGATTCATTCACCGTTGTTATACATCATTTTCCTATTTCAATCATGGCTTCACTACTGAATACAGTCTCACCAGCTGCAAATTTGTCCCATAAAACAAAACGACCCACTTGCGGCGGTTTCTTGCACTCACAGGTTCCAAATCTCCATACTTTTTCCCACGACAAGGGTTTTTCTAGGGTTTCGGCTTCGACCCAGATTGCCATTACCCCAAAAGATACGGTTTTTAACCTCCCCAATTGGAGGGCTGGGAGGAATGACCCAAGGGGTAAAGAGCTGAGGGTTTATGATGCATTTCTCCATTTAGAGTATTTGGTGGGTAAGGGTCAAAAGCCTGAGGTGACTCAAGCAACTCAGCTTTTATATGATCTTTGCAAGCTTAACAAAGCTAGAAAGGCTGTTAGGGTGATGGATATGATGGTTGGTTCAGGTATTATACCTGATGCAGCTTCCTTTACATACTTGGTCAATTTTCTGTGCAAGAGAGGCAATGTTGGGTATGCACTTCAGTTGGTTGAGAAGATGGAGGGGCATGGTTTTCCAACTAGTACTGTTACCTATAACACTCTTGTTAAAGGCCTCTGCATGCATGGCAACTTGAACCAGAGCTTGCTGCTTTTGGATAAGTTGACAAAGAAGGGTTTGGTCCCGAATGCATTCACATTTTCTTTCCTTCTCGAGGCGGCTTATAAGGAAAGGGGAGTGGATGAGGCCAGGAAGCTTCTTGGTGAGATAATTGCCAAGGGTGGAGAGCCTAATTTGGTTAGCTACAATGTGCTGTTAACTGGGTTGTGTAAGGAAGAGAGAACTGAAGAAGCTATTAGGCTTTTCAGGGAATTGCCTGCAAAAGGGTTCACTCCTAGTGTTGTGAGTTACAACATTTTGCTGAGGAGTTTGTGCTATGAAGGGCGGTGGGAGGAAGCGAACGAACTTCTGGCAGAGATGGATAAAGAGGGCCAGTCTCCTTCTGTGGTTACTTACAACATTTTGATTACTTCACTTTCGTTTCATGGAAGAACAGAACAAGCTTTCCAGGTTTTGGATGAAATGACAAGGAGTGGGTTCAAGGTGACTGCTACTAGCTATAATCCGATTATTGCCCGCCTCTGCAAGGAAGGGAAAGTGGATCTTGTTGTTCAGTGTCTAGACCAAATGATTCACAGACGTTGTAGTCCTAATGATGGAACATACTGTGCTGTTGCAATGCTGTGTGAGCAAGGTAAGGTGCAGGAGGCTTTTTTTATAATCCAAAGCTTGGGTAATAAACAAAGCAACCCTATGCATGATTTTTACAAAAACGTGATTGCAAGCCTGTGTAGGAAAGGGAACACATATGCAGCCTTTCAGCTGTTATATGAAATGACAAAGTATGGATTTACTCCAGAGTCCTTTACTTATTCATCTTTGATAAGAGGAATGTGTAGGGAGGGAATGCTAGATGAGGCTCTGAAGATATTCAGGATTTTGGAAGAAAATGACCACATGCCTAATATTGATAACTACAATGCACTTATACTTGGATTTTGCAAAGCTCGGAGAACAGAAATGTCAATAGAGATATTTCTGATGATGGTTAGCAAAGGATGTGTGCCTAATGAGAATACCTATACCATTCTTGTGGAAGGGCTTGCTTTTCAAGAGGAGACAGATATAGCAGCAGACCTTTTGAAAGAGTTGTGTGTGAAAGAGGTTCTGAGCCAAAGTACTGCTGAAAGACTCTGTATGCAATTCGACTTAAAGGAATTAATAGCAGCAGAGTAG 1815 0.4215 MTMTNNYFWMDMKILDEGMDSFTVVIHHFPISIMASLLNTVSPAANLSHKTKRPTCGGFLHSQVPNLHTFSHDKGFSRVSASTQIAITPKDTVFNLPNWRAGRNDPRGKELRVYDAFLHLEYLVGKGQKPEVTQATQLLYDLCKLNKARKAVRVMDMMVGSGIIPDAASFTYLVNFLCKRGNVGYALQLVEKMEGHGFPTSTVTYNTLVKGLCMHGNLNQSLLLLDKLTKKGLVPNAFTFSFLLEAAYKERGVDEARKLLGEIIAKGGEPNLVSYNVLLTGLCKEERTEEAIRLFRELPAKGFTPSVVSYNILLRSLCYEGRWEEANELLAEMDKEGQSPSVVTYNILITSLSFHGRTEQAFQVLDEMTRSGFKVTATSYNPIIARLCKEGKVDLVVQCLDQMIHRRCSPNDGTYCAVAMLCEQGKVQEAFFIIQSLGNKQSNPMHDFYKNVIASLCRKGNTYAAFQLLYEMTKYGFTPESFTYSSLIRGMCREGMLDEALKIFRILEENDHMPNIDNYNALILGFCKARRTEMSIEIFLMMVSKGCVPNENTYTILVEGLAFQEETDIAADLLKELCVKEVLSQSTAERLCMQFDLKELIAAE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 482 515 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 379 411 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 449 479 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 203 237 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 169 199 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 308 341 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 519 551 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 343 376 IPR002885 -
Spst5g01643 604 NCBIfam pentatricopeptide repeat 273 306 IPR002885 -
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Spst5g01643 604 Pfam PPR repeat 476 505 IPR002885 -
Spst5g01643 604 Pfam PPR repeat 162 194 IPR002885 -
Spst5g01643 604 Pfam PPR repeat family 340 381 IPR002885 -
Spst5g01643 604 Pfam PPR repeat family 514 562 IPR002885 -
Spst5g01643 604 Pfam PPR repeat family 270 318 IPR002885 -
Spst5g01643 604 Pfam PPR repeat family 201 246 IPR002885 -
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Spst5g01643 604 Gene3D Tetratricopeptide repeat domain 264 333 IPR011990 GO:0005515
Spst5g01643 604 Gene3D Tetratricopeptide repeat domain 334 405 IPR011990 GO:0005515
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Spst5g01643 604 SUPERFAMILY TPR-like 198 433 IPR011990 GO:0005515
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Spst5g01643 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 235 416 - -
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Spst5g01643 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Spst5g01643 604 Gene3D Tetratricopeptide repeat domain 417 599 IPR011990 GO:0005515
Spst5g01643 604 Gene3D Tetratricopeptide repeat domain 107 263 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01643 110 602 Glycosyltransferase AT1G05670 24.356 4.02e-40 154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01643 5 51258311 51261432 Spst5g01643 5 51258311 51261432 ECH