Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01567 ATGGCCCTGCAGATGACTTGGCAGCCGAGTCTCCTGAGTCAGAAACGCAAAACCGGTCCTCCCATAGGGCTCCGTAACCTAGGCAACTCGTGCTACCTCAACAGCGTCCTCCAGTGCCTCACATACACTCCTCCTCTCGCCAATTTCTGCCTCACTCTTCAACACTCTTCTCTCTGTGATTTCGCTGCGTCTTCGTGTCCGTTCTGCATACTGGAGAAGCAGATTTCGCGTTCGCTGAAATTGGATCTCTCGCACGACGCGCCTTCCAAGATCCAGAGCTGTATCCGGATCTTCGCCGAGCACTTCCGCTGCGGTCGCCAGGAGGACGCGCACGAGTTCCTCCGCTACGTCATTGACGCCTGCCACAACACCTGCCTCCGCCTTAAGAAGCACCGTCGCAAAGGCGGCGACGCCAATGGCGGCGGTGGAGACGGTGGCGGGAGTACGGTGGTGAAGGAGATTTTCGGTGGCGCCTTGCAGAGCCAGGTGAAGTGTCTGTGCTGTGGATATGAGTCGAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTCCATAGTAACTCGCTTAAAGACTCCATGCAAAAGTTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGTTGTAAGAAATTGGTGGCGGCTAAGAAGCAAATGTCCATACTTCAAGCACCTAACGTCCTTGTGATACAGTTAAAGAGATTTGAGGGCATATTGGGTGGCAAGATTGACAAGGCTGTTGCATTTGAAGAGGTTTTGGTTCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGCTTTGAATGGAAATCCTATAATGATTACTTGGATTGTTGTCAAACTTCCAATATTCGTTACTTGTGGTTGGAGCAGACTCTCTAGTTTGAGGAAGAAATCCCTGCCATTAGACCTCGATCCTCAACCGGAATATAAGCTCTTTGGAACTATTGTGCATTCAGGCTATTCCCCGGAATCTGGTCACTACTATGCGTATATAAAGGATGCAATGGGTAGGTGGTATTGCTGTGATGATTCTAGTGTAACAGTTGCAACCCTGCAAGAAGTTTTGTCTGAAAAGGTTTACATTCTTTTTTTCTCTCGGACTAATCAAAGGCCAGTGTCAAGTAATAATTCTCTTGCTTCAAACGGTGTAAAGCCTCATTCCAATGGGAGCCAAGCATCTGAATGCCAAAAGGTTGGTGTACCACCGAAAGCTGTGCAGGCAAAATCAAGTTCTGAGCTATCTCCTTGGAAGGATATGCCAAATGTAACGAAGACTGCTAAAGTGCCTTCCAGCTCACGAGTGAAGTTTGACATTAATGGAAGTCCTACTTCCAAAAGAAATCTTGCTCCTGTAAGTGTGAATGGAAAAGTTGATGTTTCTAGGAATCAGCCTTTAGTAATAAATGAACATGTGAAAGATTCAGTTTCGTTGGAGAATGGTAAGAAAAATCCTTCATCATTACCCACCAGGAATGGTATTGACAAAAATAAAGTTGATGTTGACAAATTGAAAAGAAAGGAGTCAACATTTACAAATGGCCACAATGATAATCAGATGGTTGATATCCATTCTGTAAAGTCAGATCCCAGGGAAGATACTGAGAAAAGCAGAGCAATAGCAGGTAAAGGTTCTGACAACTTTAAGCATGAAAGCAATGGCCTCAACAATAAACCCAAAATATTGGGGAATAAGAGAAAGGTACCTAAGGATCCATGCATTTTACTGGCAGATGATGGTCAATCTCAAGCACGAGTTCAAGAAATGAAGGCCATTCTTGAGAAAGAGGCGAAGTCATTTTTGATATCATGTGGCTGGGACGATATGGTCTATGAATTCATGCGTTCTAAAAAGAAGTTACGGGCACAAGAAGATGGAAATTTAGCTAATGGAGATGAAACAAGGTTAAGGGATGTAGGGTTCTATAATGATGCTTATACTTATTACGATGCAGCTTTGGAAAAGTGGTGTGTCGTTGAGGTGAATGATAGGGCAAACTCGCCGGTTATAATCCTTCGATGTGCACTACGCTCACATTGCAGGAAGCTGTTAATAGGAGATGCGCAGGTAGCTTTCAAGTCACGGATTCCTGAGTCATTGATAAAGGATATGATTGAACGACTCCGATCCTTTAGCCAAGAAAAACATGTTGATCTTGTCTTGCTAGTGAGGCGTGTGCTGGCGATAGTAGCAGGAGAATGTGGAGACTTGTCATCACCGAAGCTTGGCTTTGTTATTTGA 2256 0.4446 MALQMTWQPSLLSQKRKTGPPIGLRNLGNSCYLNSVLQCLTYTPPLANFCLTLQHSSLCDFAASSCPFCILEKQISRSLKLDLSHDAPSKIQSCIRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKHRRKGGDANGGGGDGGGSTVVKEIFGGALQSQVKCLCCGYESNKVDEIMDISLDVFHSNSLKDSMQKFFQPEVLDGNNKYKCDSCKKLVAAKKQMSILQAPNVLVIQLKRFEGILGGKIDKAVAFEEVLVLSSFMCKASQALNGNPIMITWIVVKLPIFVTCGWSRLSSLRKKSLPLDLDPQPEYKLFGTIVHSGYSPESGHYYAYIKDAMGRWYCCDDSSVTVATLQEVLSEKVYILFFSRTNQRPVSSNNSLASNGVKPHSNGSQASECQKVGVPPKAVQAKSSSELSPWKDMPNVTKTAKVPSSSRVKFDINGSPTSKRNLAPVSVNGKVDVSRNQPLVINEHVKDSVSLENGKKNPSSLPTRNGIDKNKVDVDKLKRKESTFTNGHNDNQMVDIHSVKSDPREDTEKSRAIAGKGSDNFKHESNGLNNKPKILGNKRKVPKDPCILLADDGQSQARVQEMKAILEKEAKSFLISCGWDDMVYEFMRSKKKLRAQEDGNLANGDETRLRDVGFYNDAYTYYDAALEKWCVVEVNDRANSPVIILRCALRSHCRKLLIGDAQVAFKSRIPESLIKDMIERLRSFSQEKHVDLVLLVRRVLAIVAGECGDLSSPKLGFVI 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01567 751 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 23 38 IPR018200 GO:0004843|GO:0006511
Spst5g01567 751 MobiDBLite consensus disorder prediction 484 498 - -
Spst5g01567 751 MobiDBLite consensus disorder prediction 380 434 - -
Spst5g01567 751 Pfam Ubiquitin carboxyl-terminal hydrolase 22 370 IPR001394 GO:0004843|GO:0016579
Spst5g01567 751 FunFam Ubiquitin specific peptidase 36 16 134 - -
Spst5g01567 751 CDD Peptidase_C19E 21 371 - -
Spst5g01567 751 MobiDBLite consensus disorder prediction 527 550 - -
Spst5g01567 751 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 376 - -
Spst5g01567 751 Gene3D Cysteine proteinases 16 375 - -
Spst5g01567 751 MobiDBLite consensus disorder prediction 380 401 - -
Spst5g01567 751 SUPERFAMILY Cysteine proteinases 15 372 IPR038765 -
Spst5g01567 751 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 22 373 IPR028889 -
Spst5g01567 751 MobiDBLite consensus disorder prediction 413 434 - -
Spst5g01567 751 MobiDBLite consensus disorder prediction 480 500 - -
Spst5g01567 751 MobiDBLite consensus disorder prediction 513 568 - -
Spst5g01567 751 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 315 333 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01567 Spst-Chr5 50013977 50035555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01567 21 441 Miscellaneous Gene Families AT2G24640 31.963 4.56e-54 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01567 5 50013977 50035555 Spst5g01567 5 50013977 50035555 ECH