Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01554 ATGGAAAGGCCAAGGCAGTGTGGACTTTCAGTGTTGCAAATTGTTGAGGGTTTTTGTGGGGTGGAGGCTTTGTTTTCCATGGCTGCGGTTGCTGAGATTCCCGCCGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTTCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCCTTGGCGAAGGAGTTTTTCCCTTCAACATATTCTCCCAATCATGATCATCGCCTTCAGGGCTTTAATCAGCTCTCACCAACCCACTTTCTGGTCAACTCTAAGCCCTCTGCTAATGAGAATTTCCCGAACAATCGAAGGAGAAGAAATGGTTTTAACCAAGGAAGGAGGAGGGTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTTTATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCAGCAGTTGTGGACAAGTAATTGATTGCCGCATTTGTGGCGACCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAATTTGCAGATGAGTATGGTGCTAGGACAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTGAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGCGAAATGTGTGCCCGGACTGTCTATTGTACAAATATTGATAAGAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCGGCTTGTGGCGAGGTTACGCGCCTGAGGCTTTTGGGGGACCATGTGCATTCGACTCGAATTGCTTTTGTAGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTTAACTGTAGTGGGATGCTCTTGGGAACCCAGCCTATAAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCGGCATCTCATTAG 969 0.4551 MERPRQCGLSVLQIVEGFCGVEALFSMAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSTYSPNHDHRLQGFNQLSPTHFLVNSKPSANENFPNNRRRRNGFNQGRRRVSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01554 322 FunFam Polyadenylate-binding protein-interacting protein 10 228 306 - -
Spst5g01554 322 Pfam Ataxin-2 C-terminal region 58 72 IPR009818 -
Spst5g01554 322 SUPERFAMILY RNA-binding domain, RBD 97 210 IPR035979 GO:0003676
Spst5g01554 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 303 IPR000504 GO:0003723
Spst5g01554 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 201 IPR000504 GO:0003723
Spst5g01554 322 SUPERFAMILY RNA-binding domain, RBD 225 316 IPR035979 GO:0003676
Spst5g01554 322 MobiDBLite consensus disorder prediction 98 125 - -
Spst5g01554 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 212 IPR000504 GO:0003723
Spst5g01554 322 Gene3D - 222 316 IPR012677 -
Spst5g01554 322 Gene3D - 95 213 IPR012677 -
Spst5g01554 322 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 58 316 - -
Spst5g01554 322 SMART rrm1_1 138 208 IPR000504 GO:0003723
Spst5g01554 322 SMART rrm1_1 235 306 IPR000504 GO:0003723
Spst5g01554 322 MobiDBLite consensus disorder prediction 98 112 - -
Spst5g01554 322 CDD RRM1_CID8_like 135 214 IPR034823 -
Spst5g01554 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 310 IPR000504 GO:0003723
Spst5g01554 322 FunFam Polyadenylate-binding protein-interacting protein 11 101 214 - -
Spst5g01554 322 CDD RRM2_CID8_like 230 311 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01554 Spst-Chr5 49272509 49279216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01554 134 291 Eukaryotic Initiation Factors Gene Family AT1G34140 27.329 1.63e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01554 5 49272509 49279216 Spst5g01554 5 49272509 49279216 ECH