Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01310 ATGTCGCATTCGTCCGGCGTCGACGCCGCCTTCGCCGATCGCTTCCGCCACGCGCTCAGCTGCAACAACGACACCAGCAACATTAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCCCCGGTCTCGCCATTGCGCACCACGCGCGCCCCCGCCGCGAGTACCAGCTCAAGCTCATCTGGGTCCTTCTCGGGTCGAACCGGGCCCAACCCGGTTCCCCGAAAGCCCGAATCTTCACACACCAATAGTAACACAAATAACAACAGCAACAACAACAACTCCGGCGAGCTTTCTGGTTCGAGTGAGAACAGCCCCACCGCGCGTGGGTTCAAACCGGGTCACACGAGATCCGACTCCGGATCTGCGCCGGCGCCGCTGATATATTCTGGCCAGACTGCCACTTCTCCGGCGATGAATGTTCTCCCCACCGGGAACATCTGCCCCTCCGGGAAGATCTTGAAGACGGGGATGGGGATGGTGGCGAATCGGAGTAGTAGAAGCGATGTTTTGGGGTCCGGCATGGGGAACTACGGCCACGGGAGCATAATGCGCGGCAGTGGGAAGGCGGAGCCGGTGATCTCTCGCGGTGGCGGCGGCAATGAGACAGTGAAGAGAGGTGGGCACGTGCAGAGTGTGGATCCGGAGGAGTTGAAGAGATTGGGGAATGAGTTTTATAAAAGAGGGAACTTTGCTGATGCGTTGAGTCTTTATGATCGCGCGATTGCGATATCGCCGGCTAGTGTCGCTTACCGGAGCAACCGCGCGGCGGCGCTGACCGGGCTCGGACGGTTGGGTGAGGCTGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGACCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGATAATGCTAGGAAGCACCTTGGTTACCATGGGATGCAGCCAGATCCATCTGAGACGCAGAGGTTGCAAGTGGTGGAAAAACATATCAGCAAATGTGGGGATGTACGGAGAATAGGGGATTGGAAGAGTGTTCTCAGGGAGGTTGATGCTGCTGTTTCTGCTGGAGCGGATTCTTCACCTCAGCTCTTTATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAATCAGTTTTGTTGCATATTCCTAAATCAGAGTTGCACACTAGTTCCTCTTCTCAGGCAAGATTTTTTGGGATGCTTTCTGAGGCCTATTCCTATTTTGTCAGAGCACAGATTGAGATGGCATTGGGAAGGTTCGAGAATGCAGTTACAGCTGCTGAGAAAGGCAGTCAGATTGATCCTCGGAATGTTGAAGCTGCTGTTTTGCTCAACAATGTGAGGATGGTGGCAAGGGCCCGAGTGCGCGGAAATGATCTTTTTAAATCTGAAAGGTACACTGAAGCTTGCTCTGCGTATGGGGAAGGTTTGAGACTGGACCCTTCGAATTCTGTTCTATATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTCCAACCAAGCTTTACATATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAGAGGTGGGAGGAAGCCGTCAAAGACTATGAGGTCTTGCGGAGAGAACTTCCAAATGATAATGAAGTTGCTGAATCGCTTTTCCATGCACAAGTTGCCCTAAAGAAATCACGCGGTGAAGAAGTATATAATTTAAAATTTGGTGGCGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTATCTGTTGTCCATTTTGAAGTTGCATCTAACTCACAATGCAAACATATATCACCATTTGTGGACACACTATGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGATATTCAAGAAAACCCAACAGTTGCAACTGCAGAGAACGTTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAGCCGAGTGAAGGAAATTGTATGCCCTAGTCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2061 0.5056 MSHSSGVDAAFADRFRHALSCNNDTSNINKPDFRELDLGSPVSPLRTTRAPAASTSSSSSGSFSGRTGPNPVPRKPESSHTNSNTNNNSNNNNSGELSGSSENSPTARGFKPGHTRSDSGSAPAPLIYSGQTATSPAMNVLPTGNICPSGKILKTGMGMVANRSSRSDVLGSGMGNYGHGSIMRGSGKAEPVISRGGGGNETVKRGGHVQSVDPEELKRLGNEFYKRGNFADALSLYDRAIAISPASVAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVDNARKHLGYHGMQPDPSETQRLQVVEKHISKCGDVRRIGDWKSVLREVDAAVSAGADSSPQLFMCRAEAFLKLHQIDDAESVLLHIPKSELHTSSSSQARFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKGSQIDPRNVEAAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNSQCKHISPFVDTLCGRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01310 686 Gene3D Glutaredoxin 579 685 - -
Spst5g01310 686 FunFam TPR repeat-containing thioredoxin TTL4 578 685 - -
Spst5g01310 686 ProSiteProfiles TPR repeat profile. 406 439 IPR019734 GO:0005515
Spst5g01310 686 SUPERFAMILY TPR-like 214 442 IPR011990 GO:0005515
Spst5g01310 686 MobiDBLite consensus disorder prediction 47 67 - -
Spst5g01310 686 Pfam Thioredoxin 592 677 IPR013766 -
Spst5g01310 686 SMART tpr_5 248 281 IPR019734 GO:0005515
Spst5g01310 686 SMART tpr_5 214 247 IPR019734 GO:0005515
Spst5g01310 686 SMART tpr_5 486 519 IPR019734 GO:0005515
Spst5g01310 686 SMART tpr_5 452 485 IPR019734 GO:0005515
Spst5g01310 686 SMART tpr_5 406 439 IPR019734 GO:0005515
Spst5g01310 686 SMART tpr_5 520 553 IPR019734 GO:0005515
Spst5g01310 686 MobiDBLite consensus disorder prediction 21 130 - -
Spst5g01310 686 MobiDBLite consensus disorder prediction 74 110 - -
Spst5g01310 686 Gene3D Tetratricopeptide repeat domain 212 572 IPR011990 GO:0005515
Spst5g01310 686 MobiDBLite consensus disorder prediction 181 207 - -
Spst5g01310 686 Pfam Tetratricopeptide repeat 407 438 IPR019734 GO:0005515
Spst5g01310 686 CDD TRX_family 591 678 - -
Spst5g01310 686 Pfam Tetratricopeptide repeat 220 280 - -
Spst5g01310 686 ProSiteProfiles TPR repeat profile. 214 247 IPR019734 GO:0005515
Spst5g01310 686 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 24 683 IPR044534 -
Spst5g01310 686 SUPERFAMILY Thioredoxin-like 489 684 IPR036249 -
Spst5g01310 686 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01310 Spst-Chr5 26866282 26869240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01310 228 550 Glycosyltransferase AT3G04240 22.324 5.64e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01310 5 26866282 26869240 Spst5g01310 5 26866282 26869240 ECH
Spst5g01310 5 26866282 26869240 Spst11g00549 11 27479075 27482284 PCT