Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01186 ATGGACCCTGACGTCATCGAGATTCCTCCCCCAATTCACCAACCTTCAAATTTCTATCACAACAACAAGGCAAGCTCCTGCCACCGATTCAAAGTTTTTATTTTGTATTGTCTGGAATTGTTGGAGGTGTTTAATCAATCCACAATTTCGCCCTTTTCTGCTATTGAGTACCTGCTTTTGCTGTTGTTAAGACCACCTTTTCGTGTTTGTTGCTGCATGTGGGAGTACCTAAGAATAGATGTTAATTTGATTGAGAAACTTCCAAATCACGCAGTTGTTTCTTCTCAGGTTGTTCTATTATGGCGATATGTGCGTGCTATGCATGTCAATTTGCATGATGTGATTGACATTGACAATGATGATGATTCTGAGGATGTAGTGATAATTGGCGAGAAAGTTAATAATAGTAACAAAGGGAAGACAATTGATGCTGTTCATGATGATATCCAAGTTGTGAATATGTCTGATTATACTTTCTCTGTGCCTGGTGCGGAAAATTTTGGATCAGTTAGCGGGATTGCATCTTCTAACAATCTCCCTTCAGTGTCAAATAATTTGATCAATGTTGATGGTCATGGTTCTGATCTATCATATGATGATGATGACTACAGTGATATTTTGTCGGAAGAATATATGGATGTAGAGATGGATGTAGATGAGTATGCATTATTACAGAAACGTTTTGATAATGTGGATATACCTCCTGGAATTGAAGCACCTTTTACTTGGTTTCCACCAGGATATGATGTAGGTTTTAACAAGACTGGAAATAGTACATTTTATCCTTGGCATCATATGCAGTCAAATGCTGCATTAAGTCCCATGGTCCCCTCTTCTCAGCCTTCTGCGTCATTAGAGCCAACTAATTCTAAAATTCAAGCATCTTCAATGGGTGGTACTGACATTCAAATGAAAATGGATAATGTTAATCACTCCTCTGGAACAGACTTGTCTTCTCCTCAATTTTTTTCTCAATCTGCCCCATCTAAGAAGAAATCAGCTACTTCAAAACTCAGAGGGCGTACTTCAAATAATTCAGTAGGAGTAGAATCATCAAAGTCTCACTGGTTTTCGGGGCCTTTCTATAGTAAAAAGAAGCAATACCTCAGTTTATTTGACAATTTAGAGTCTGTGAAGCTGCAACATGCAGGTCAGCCACCATATGGGGGCCAATTTCAAACTGCTATGAAGGCAGCTGGTAGTAGCATTTCCTCCCATTCAAATTTTATTGGACACCATGGATCATTGCATATTCCGGGGATAGAACCAGCAAAACCTTGGTGGAAGGTTTCTCAAAATGCTAAATCATTTCCTATTCATGATAAAAAGTCTTCTAATATTGTTTATCATCCACTTGATCCTCTTATTGCCCATCCTGATCATGGATTTGATATCTGGGTTCACGATTCTGCTGGAGATGGATTTAATGGAAAAACAGTGGATGGCCCTCTTGTGACAATGTCGGATGAAGCCAGAGAAGAAATTATGAGGAATTTTCGAAGTTTTAAACAATTTGACACTGTTGAGGACACTTCAGATCATTACTTTGTCCGCAACAGTTCTTCAATGAAGCAGCCACCAAAGAATTGGGCTAAAAAAATCCAGGAAGAGTGGAAGATTTTGCAGAAGGATCTGCCAGATTCAATATTTGTCAGAGTTTATGAGTCAAGGATGGATCTTCTAAGGGCTGTGATTATTGGAGCTGAAGGGACTCCATATCATGATGGCCTATTCTTTTTTGATGTTTTCTTTCCCAGTGGCTATCCCAGTGTACCACCGCAAGTCCATTACCACTCTGGAGGTCTACGGCTCAACCCAAATTTGTATAATTGTGGAAAAGTATGCCTTAGTCTGCTTAACACCTGGAGCGGCAACAAAAACGAGAAGTGGCTTCCTGGTGTTTCAACGATTCTACAGGTTCTGGTCTCCATACAAGGTCTAATCCTGAATACAAAGCCCTACTTTAATGAACCTGGATATGCACACATGAGTGGTTCAGCAAATGGTGAAATGATGTCCTTTCAGTATAACGAGGACACATTCATTCTATCATTGAGGACAATGATGTATATGATACGAAGGCCTCCAAAGAATTTTGAGGATTTTGTTAAGGGGCATTTCTGCAGCAGAGCTGGTGATATTCTGGTGGCATGTAAGGCATACATGGAAGGTGCTCAAGTTGGGTGTTTGGCCAAAGGAGGAGTCCAGGACGTTGATGAGGGAGACAGAAGCTGTTCACAGAGATTCAAGGATTCTTTATCCGGATATATAAACATGCTTGTCAGAGAGTTTGCTCAAACTGGAGCAAAGGACATTGAGAAATTCCTACCTCCTCCAGTAGCCACAACAGTAGCACTGGACAAGCCATCAGGTGTTGTTGCTTGA 2385 0.4034 MDPDVIEIPPPIHQPSNFYHNNKASSCHRFKVFILYCLELLEVFNQSTISPFSAIEYLLLLLLRPPFRVCCCMWEYLRIDVNLIEKLPNHAVVSSQVVLLWRYVRAMHVNLHDVIDIDNDDDSEDVVIIGEKVNNSNKGKTIDAVHDDIQVVNMSDYTFSVPGAENFGSVSGIASSNNLPSVSNNLINVDGHGSDLSYDDDDYSDILSEEYMDVEMDVDEYALLQKRFDNVDIPPGIEAPFTWFPPGYDVGFNKTGNSTFYPWHHMQSNAALSPMVPSSQPSASLEPTNSKIQASSMGGTDIQMKMDNVNHSSGTDLSSPQFFSQSAPSKKKSATSKLRGRTSNNSVGVESSKSHWFSGPFYSKKKQYLSLFDNLESVKLQHAGQPPYGGQFQTAMKAAGSSISSHSNFIGHHGSLHIPGIEPAKPWWKVSQNAKSFPIHDKKSSNIVYHPLDPLIAHPDHGFDIWVHDSAGDGFNGKTVDGPLVTMSDEAREEIMRNFRSFKQFDTVEDTSDHYFVRNSSSMKQPPKNWAKKIQEEWKILQKDLPDSIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPSVPPQVHYHSGGLRLNPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSANGEMMSFQYNEDTFILSLRTMMYMIRRPPKNFEDFVKGHFCSRAGDILVACKAYMEGAQVGCLAKGGVQDVDEGDRSCSQRFKDSLSGYINMLVREFAQTGAKDIEKFLPPPVATTVALDKPSGVVA 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01186 794 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 275 770 - -
Spst5g01186 794 SUPERFAMILY UBC-like 518 696 IPR016135 -
Spst5g01186 794 CDD UBCc 532 658 IPR000608 -
Spst5g01186 794 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 529 689 IPR000608 -
Spst5g01186 794 SMART ubc_7 532 689 - -
Spst5g01186 794 Gene3D Ubiquitin Conjugating Enzyme 487 767 IPR016135 -
Spst5g01186 794 MobiDBLite consensus disorder prediction 272 353 - -
Spst5g01186 794 FunFam Probable ubiquitin-conjugating enzyme E2 23 492 768 - -
Spst5g01186 794 Pfam Ubiquitin-conjugating enzyme 534 663 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01186 Spst-Chr5 17264357 17269828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01186 472 777 Miscellaneous Gene Families AT2G33770 49.675 5.81e-87 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g01186 5 17264357 17269828 Spst11g00617 11 28320325 28324501 PCT