Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00437 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATATAGCAAATGGTAGTAACAGTCCTCAGCTGCTTCCTCCGCTGCTGCAACAGCCACAGGACCCTCACGTGGGAGTTCATGATGCTGCGGGCCCAATCCGGCCCGGTTTGATGGCGGACCGGGCCAAGATTCCGGCCCAGGAAGGAGCTCTGAAGTGTCCTCGGTGTGAATCAACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAACCGCGGCACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGTTCCAAATCTCCGGTTTCTTCTGAGAAACCATCACTTCCCAATTCCACAAGTGCCATGCCTGAACTTATTGGTCGGTTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGGAACACAGGTGTTAACTTGCGTGAGATGCAAGCACAGAACGGTTCTCATATGGGGTTTCAAATGGGTGGTCAGGGTCATGGTTCAAGTGTTACTCCTACAGGAGGATTAGTGGAGCAGTGGCGGTTTCAGCAGTTTCCTTTCTTGAACGGTTTTGAGTCAGCTTCTGGTGTTTCTTCCTACCCTTTTCAAACTGAAAGTGTTGAAGGTTTAGTTGGAGAAATTGCCGCACCTTCTAGGGTTACTCAGCTGCCACCACGGGTTAAATTGGAATATAACGGTGGTTTGAATTTGTCAAGATCTCCTTTGAGTGTCTCCGAAAATAGTAACCATTACTATTCATGGACGGATTTATCTGGTCTTGCATCCTCTTCCGCCAGTCATCTCTTGTAA 912 0.4759 MVFSSIPVYLDPPNWQQQQNQHIANGSNSPQLLPPLLQQPQDPHVGVHDAAGPIRPGLMADRAKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSSEKPSLPNSTSAMPELIGRFPQPFMASLQSMNRYGVGNTGVNLREMQAQNGSHMGFQMGGQGHGSSVTPTGGLVEQWRFQQFPFLNGFESASGVSSYPFQTESVEGLVGEIAAPSRVTQLPPRVKLEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00437 303 MobiDBLite consensus disorder prediction 116 151 - -
Spst5g00437 303 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Spst5g00437 303 MobiDBLite consensus disorder prediction 18 35 - -
Spst5g00437 303 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Spst5g00437 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 198 IPR045174 GO:0003700|GO:0006355
Spst5g00437 303 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Spst5g00437 303 MobiDBLite consensus disorder prediction 18 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00437 Spst-Chr5 3433151 3434218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00437 8 222 C2C2-Dof Transcription Factor Family AT3G55370 41.909 4.26e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst5g00437 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00437 - - gmx:100775899 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00437 5 3433151 3434218 Spst2g02296 2 22237773 22238886 PCT