Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00414 ATGGATAGAAGAATCACCTCCACTATTAAAGTTACTAATGATAGAGAAGAGTCTTGCTTGGATGAGAGTGATGTCTCTGCTGTCCTTAGCTACATAAAGCAAATGCTCATGGAAGAGGACACTGAAGAGAAGTACAGTATGTTCCATGATTCCTTAGCTCTCCAACATACTGAGAGATCATTTTATCAGGTTATCGCTAACAACAACCCTTCTTCTTCCTCCTCCTCTTCCTCCACACACCATTATGTTCACAACAGTCCCAGTTCAAGTGTGGAGAGCCCTGAGCAAAGTGTCTCTGGTAGCTCCACTGATAATAGCTGTAGCAGTAACAGTACTGCCATCTCTGCTGAGTATCAGTGGAGAAGCGTTGACCAAAACACCCCCATACTGCCAAACGCTTTTACCTTTCCGGAAAACTTTGTTTTCCACTCAAATTCAACCCCCACCACACAATCTTCCATTAATACTGGATTTGGATTCTTACACAATTCCCTTCTTGATTCTGCATTTCAAGAACATTTCAAGAGAGGTACAGAGCAAGGTACCAGGTTCCTTCCTAGACATACTCCATTCTTTGTTGACACGGACAGCACAACCTTTTTCCCTTCTTTCACAGAGGCTCCAACTGTGGTAATTAAGACAGAAACAGAAGAAAATGTTGAAGGGGAGAATTTTCTGTCTGTGTCAAGAGGGAGGAGAAATCGGGATCGGGAAGAGTATGAAGCAGATGGTAGAAGCAGGAAGCAATCAGCAGCATACATGGATGAGAGTGAGCTATCTGAATTGCTTGATAAATTGGTGCTAGGCACTGGGTTAGGAAAAGGGGTACCTCCTGACACATCCCCTTACCAAAACGATGAAATATTATTAACAAACATGTTTGGTAGGGAGGTCAGGGAAAGTGAGGAGGAAGTTGTTGATCTGAGGGCACTATTGATGCTTTGTGCACAAGCTGTTGCTTCTGATAGTCATTCATTTGCAAAGCAACTGGTAAAGCAGATTAAGCAGCATTCTTCTCCAATTGGGGATGATACTCAGAGGCTTGCACACTACTTTGGAAATGCCCTTGAAGCACGCCTGGATGGAACCGGTTACCAGGTTTATAGTGTTCTATCCTCCAAAAGAACCTCTGCCAAAGACATGATAAAAGCTTACCGTGTATATGTTTCAGTGTGCCCGTTTGAAAAGATAGCAGTCATGTTTACCAACAATTTAATTAAGAATCTAACTGAGGATGCAGAAACAATTCACATCATAGACTTTGGTATCCGTTATGGTTTCAAGTGGCCTTTACTTATCAGCCACCTATCAAGACGTCCTGGTGGACCACCCAAGCTACGTATCACGGGGATAGATCAGCCACAACCAGGTCTCAGGCCAGAGGAGAGGGTGCTGGAGACGGGTCGTAGACTTGAAAAATATTGCAAGCGTTTCAATGTGCCATTTGAGTTCAATGCTATTGCAAGAAGATGGGAGACCATCAGAGTTGAGGACCTCAAGATAGAGAAAAACGAATTTGTTGCTGTGAACTGCACGTTTCAGTTCCAGCATCTACTTGACGAGTCCGTGGTGTTGAATAATCCCAGGGATGCTGTTCTGAGGTTGATTAAGAAGGCAAATCCTGACATATTTGTGCATGGCATTGTCAACGGGTCCTACGATGTGCCATTCTTTATGTCACGGTTCCGAGAGGCTCTCTTTCATTACTCTGCACTGTTTGATATGCTTGACACCAACGTCGATCGTGAAGATCCCATGAGGTTGATGTTTGAGAAGGAGTTGTTCGGAAGGGAGATCACGAACATCATTGCTTGTGAAGGTTGTGAGAGGGTTGAGAGGCCGGAAACATACAAGCAATGGCAGCTTCGAAACATGAGAATTGGCTTTCGGCCGCTTCCTATGGATCAACGTATCGTTGACAAATTAAAGGGTAGGTTGAGAGATGATGCGTACAACACCAATTTCATGCTTGAGGTGGATGGTGATTGGGTGCTACAAGGTTGGAAGGGTCGAATTCTACATGCTTCCTCTTGTTGGATACCGGCATAG 2049 0.4417 MDRRITSTIKVTNDREESCLDESDVSAVLSYIKQMLMEEDTEEKYSMFHDSLALQHTERSFYQVIANNNPSSSSSSSSTHHYVHNSPSSSVESPEQSVSGSSTDNSCSSNSTAISAEYQWRSVDQNTPILPNAFTFPENFVFHSNSTPTTQSSINTGFGFLHNSLLDSAFQEHFKRGTEQGTRFLPRHTPFFVDTDSTTFFPSFTEAPTVVIKTETEENVEGENFLSVSRGRRNRDREEYEADGRSRKQSAAYMDESELSELLDKLVLGTGLGKGVPPDTSPYQNDEILLTNMFGREVRESEEEVVDLRALLMLCAQAVASDSHSFAKQLVKQIKQHSSPIGDDTQRLAHYFGNALEARLDGTGYQVYSVLSSKRTSAKDMIKAYRVYVSVCPFEKIAVMFTNNLIKNLTEDAETIHIIDFGIRYGFKWPLLISHLSRRPGGPPKLRITGIDQPQPGLRPEERVLETGRRLEKYCKRFNVPFEFNAIARRWETIRVEDLKIEKNEFVAVNCTFQFQHLLDESVVLNNPRDAVLRLIKKANPDIFVHGIVNGSYDVPFFMSRFREALFHYSALFDMLDTNVDREDPMRLMFEKELFGREITNIIACEGCERVERPETYKQWQLRNMRIGFRPLPMDQRIVDKLKGRLRDDAYNTNFMLEVDGDWVLQGWKGRILHASSCWIPA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00414 682 MobiDBLite consensus disorder prediction 228 251 - -
Spst5g00414 682 MobiDBLite consensus disorder prediction 222 251 - -
Spst5g00414 682 ProSiteProfiles GRAS family profile. 299 680 IPR005202 -
Spst5g00414 682 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 237 670 IPR005202 -
Spst5g00414 682 MobiDBLite consensus disorder prediction 66 110 - -
Spst5g00414 682 Pfam GRAS domain family 308 679 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00414 Spst-Chr5 3313822 3315870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00414 28 682 GRAS Transcription Factor Family AT1G07530 47.605 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst5g00414 GRAS 2.3e-112 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00414 5 3313822 3315870 Spst5g00414 5 3313822 3315870 ECH
Spst5g00414 5 3313822 3315870 Spst2g02314 2 22492154 22494085 PCT
Spst2g02315 2 22496722 22498773 Spst5g00414 5 3313822 3315870 PCT