Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00389 ATGGCTGAGAAAGCGACTATGTATTCATTAGGGGATTGGAGGAGAATACCAATCTGCTCTTTCTTCAAGGATGCTAGGCTGGTTTTTAAAGCAGACAGTCTTGGTCGGGAAATTTTGTCAATTGCATTGCCTGCAGCAATGGCTTTGACAGCTGATCCTATTGCTTCACTGATTGACACAGCATTTATTGGCCAAATAGGTCCAGTAGAGCTTGCTGCTGTAGGAGTTTCAATAGCTCTCTTCAATCAAGTATCAAGGATTGCAATATTCCCACTTGTCAGTGTCACAACCTCTTTTGTGGCCGAGGAAGATACCCTTAGTGGAGCAGGCCCTCAAATAGAGGAGGGTAAATGTTTAGAAGCATCTCGACCTATGGATGCTGAAACCAAAGAGCTATTACCACAGAAAGGTGGAAATGTTCAAAGAACAGATTTTGTTGGTGAAAGTTTTAATATAGTTAAAGTGGAACATAAGAGAAGGCATATCCCTTCGGCTTCATCGGCATTATTTATTGGTGGTGTCCTTGGCCTCATCCAGGCAATATTTCTTATATCTGCAGCAAAACCTTTATTAAACTTCATGGGAGTAACTTCTAACTCTCCTATGCTACACCCGGCACACCAGTATCTGACTTTGAGGTCTCTCGGTGCTCCTGCCGTTCTTCTTTCCTTAGCAATGCAAGGAATCTTCCGAGGATTTAAAGACACAAAAACACCTTTATATGCTACTGTGGCAGGAGATGTAACTAACATAGCTTTGGATCCTATATTCATGTTCGTATTTCGCTTAGGTGTCAGTGGTGCAGCCATTGCCCACGTTATATCTCAGTACCTAATTTCAGCTATACTCATGTGGAGATTGTTGGAACAAGTTGACATTATTCCTCCGAGCATAAAGCATCTGCAATTAGACCGTTTTCTTAAAAATGGTTTTTTATTATTAATGAGAGTCATCGCTGTAACATTCTGTGTGACACTGGCTGCATCATTAGCTGCAAGACAAGGATCAACATCCATGGCTGCATTTCAAGTCTGTCTGCAGGTTTGGTTGGCAGTGTCTCTTCTTGCCGATGGTCTGGCCGTTGCTGGGCAGGCAATTCTTGCAGGTGCATTTGCTAACAAGGACTTTGACAGGGCATCAGCAACCGCAGCCCGAGTTCTGCAGATGGGTTTGGTTCTAGGATTGGGCCTTGCATTTATTCTTGGAACTGGATTGCACTTTGGTGCTAAAATATTTACAAAAGATGCTAATGTCCTCCACCTCATTCAAATTGGGATTCCGTTTGTGGCAGTCACTCAACCCTTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGAGCGTCCGATTTTGCATATTCAGCCTTTTCCATGGTTGTGGTGGCAATTCTAAGCATCATTTGTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTCTGACCATCTATATGGGTCTTAGGGCATTTGCCGGCTTCTTGAGGATTGGAACAGGATCAGGACCTTGGGAGTTCCTAAGGAGCTCATAA 1545 0.4311 MAEKATMYSLGDWRRIPICSFFKDARLVFKADSLGREILSIALPAAMALTADPIASLIDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTLSGAGPQIEEGKCLEASRPMDAETKELLPQKGGNVQRTDFVGESFNIVKVEHKRRHIPSASSALFIGGVLGLIQAIFLISAAKPLLNFMGVTSNSPMLHPAHQYLTLRSLGAPAVLLSLAMQGIFRGFKDTKTPLYATVAGDVTNIALDPIFMFVFRLGVSGAAIAHVISQYLISAILMWRLLEQVDIIPPSIKHLQLDRFLKNGFLLLMRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDFDRASATAARVLQMGLVLGLGLAFILGTGLHFGAKIFTKDANVLHLIQIGIPFVAVTQPLNSLAFVFDGVNFGASDFAYSAFSMVVVAILSIICLLILSSAGGFIGIWVALTIYMGLRAFAGFLRIGTGSGPWEFLRSS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00389 514 Pfam MatE 315 468 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst5g00389 514 Pfam MatE 164 256 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst5g00389 514 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 11 513 IPR044644 -
Spst5g00389 514 CDD MATE_DinF_like 34 503 IPR044644 -
Spst5g00389 514 NCBIfam MATE family efflux transporter 44 483 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00389 Spst-Chr5 3191589 3195166 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00389 5 3191589 3195166 Spst11g00200 11 7365158 7373388 ECH
Spst5g00389 5 3191589 3195166 Spst5g00389 5 3191589 3195166 ECH
Spst7g00308 7 2426459 2429017 Spst5g00389 5 3191589 3195166 ECH
Spst5g00389 5 3191589 3195166 Spst2g02354 2 23058683 23060511 PCT