Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00244 ATGGCATCAAAGATTCCTCAGTTACCATCAAAGATGAACCAGGTATCACAAGTAGTGTCAGATATGGGAGTTTCACACTATAAGTTATTGTTGGAGAAGAACAAACACTACATCCAGGATCCACCCACCATTGAAAAGTGTCAATCGATGGCCAAACAGTTGTTTTATACTCGCCTTGCCAGGTGCACTCTCTTACCCTTGATTCTTCACTTTCTAGGTTCTGTTAACTGCTCTATATTCACAGAACAATTAGTCTTAAGCTATGGTATGTACTATGGTTCTTTCAGCATTCCTCATCGTTACGATTCATTCTGGAAGGAATTGAATCATGCAAAGAACCTAATGAAGAACTGGAAGGACCTAAACAAGGCAAATGTTGGTTTTGCTGCTTTGTTTAGACTCGAGTGTTTTGCATGGTTTTGGGGAGCAAAAAAACCGTTCGCATTCCCTTCCAACGTCCCTGATTCGCTTCGCTGGATCCAACGCTCACGGTCCGCTGATGAAACCCACATCATGATGGGGTGGCACTTGCTTTGTTCACGGGCAAGCCTGTCGTGGACTCACTGGGCCACAGTTGCCGGCGGCTCAACCCTTTCCGTTGGCTTGGCTCCGCCAAGTTACGCCGCGGCTCAAACTCATCAAGCTTCGACCTATGTCGTGAGTGGACTGGAAGAGAAGAGAGGGTGCATTTTCCCTTTCTATTTGAAGGCTGCGGAGTCAGTTAAATCCGTGCCTTTTCAGCCAGTTTCCTCCATCCACAAGCCAACCTCGAAGCTCAATCAATCTCTCTGCTTTTCCACTCATCCATCACACCCTAAACTGAAAGTTCTTTTTAGGGATAGGAGGATGCAGGATCCAGCGTTATTCCAACCCTTGAAACCCCACTTTCCCGAGCAAGAGCAACTTAAATGTCCGCGTTGCGATTCTATCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCACAGCCTCGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCCGTTGGGGGTGGAAGCAGAAAGAACGCTAAACGATCATCCTCATCCACCAACACCAAACGCGCTTCCCCGTCACCCGTTATAGAACCCGACCCGAATCATATTTGCTCTAACCCGGTTGGTGGTGGGAGTTTTGGTTCACTTTTGGCATCAACTGGTCATCTGGGGAACCTGTTGGAGGGTCTGAAGTCAAGTGGGGCGAATCTAAAAGCTGTGCAAATGGAGGAGTTTGGGGAGAATGTTAGTTCTGGTCATATGGCGGATCTGGGATCGGGTCGGAACCCTGTGTTGGAGATTGAAAGAAATGGGAATGCAGAGAGTTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTACTAATGCGTGGTCTAACCTTGCAATTTTCACTCCTGGGTCTAGCTATGAAAATTAA 1455 0.466 MASKIPQLPSKMNQVSQVVSDMGVSHYKLLLEKNKHYIQDPPTIEKCQSMAKQLFYTRLARCTLLPLILHFLGSVNCSIFTEQLVLSYGMYYGSFSIPHRYDSFWKELNHAKNLMKNWKDLNKANVGFAALFRLECFAWFWGAKKPFAFPSNVPDSLRWIQRSRSADETHIMMGWHLLCSRASLSWTHWATVAGGSTLSVGLAPPSYAAAQTHQASTYVVSGLEEKRGCIFPFYLKAAESVKSVPFQPVSSIHKPTSKLNQSLCFSTHPSHPKLKVLFRDRRMQDPALFQPLKPHFPEQEQLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRSSSSTNTKRASPSPVIEPDPNHICSNPVGGGSFGSLLASTGHLGNLLEGLKSSGANLKAVQMEEFGENVSSGHMADLGSGRNPVLEIERNGNAESFLSMQNGDSSCWNGTNAWSNLAIFTPGSSYEN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00244 484 Coils Coil 482 484 - -
Spst5g00244 484 MobiDBLite consensus disorder prediction 346 379 - -
Spst5g00244 484 ProSitePatterns Zinc finger Dof-type signature. 304 340 IPR003851 GO:0003677|GO:0006355
Spst5g00244 484 Pfam Dof domain, zinc finger 300 356 IPR003851 GO:0003677|GO:0006355
Spst5g00244 484 MobiDBLite consensus disorder prediction 353 369 - -
Spst5g00244 484 Pfam Mitochondrial ATP synthase g subunit 17 141 IPR006808 GO:0000276|GO:0015078|GO:0015986
Spst5g00244 484 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 285 394 IPR045174 GO:0003700|GO:0006355
Spst5g00244 484 ProSiteProfiles Zinc finger Dof-type profile. 302 356 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00244 Spst-Chr5 2183112 2193205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00244 293 404 C2C2-Dof Transcription Factor Family AT1G51700 57.037 4.11e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst5g00244 ATP-synt_G 6.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00244 - - gmx:100798927 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00244 5 2183112 2193205 Spst5g00244 5 2183112 2193205 ECH