Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02812 ATGGGGTTATGGAAAAAGGAGATAACAGAAGAAGCGAAGAAACAACTATGGCTGGCAGGGCCTATGGTATTTGTGTGTGTGTTTCAGTACAGTTTGCAGATGATATCTCTCATGTTTGTAGGCCATTTGAATGAAATGCTTCTGGCTGCTGTATCTTTGTCTACTTCAATTGTCAATGCTACTGGTTTCAATGTCATGATGGGAATGTCAAGTGCACTGGACACATTTTGTGGTCAAGCATATGGAGCAAAGCAGTATCATATGCTTGGTGTGCACACCCAAGGAGCCATGTTGGTTCTCACCCTTGTTACTATACCTTTGTCCATTCTTTGGGTATACTTAGAGTCTATTCTAGTTCTTCTTCATCAAAACAAAGAAATTGCAGCACATGCTCAACTATATGCCAGATATTTGATCCCAAGCCTTTCAGCCAATGGTCTTCTTCGGTGCATTACTAAGTTCCTACAAACCCAAAACATAGTTTTTCCTATGGTGCTAGCCACTGGACTTACTAGCTTACTACACTTGCTTCTCTGTTGGGTTTTGGTTCAAAAACTTGAGCTTGGTATCAAAGGATCTGCCATTGCAATTTGCATTTCAAATTGGTTTAGTACCATAATACTTGCCCTTTACGTTCGGTTCTCCCCTTCATGCAAAACAACTTGGACTGGTTTCTCTAAAGAAGCATTGCATAACATCCCGAAATTCCTCAGGCTTGCTTTTCCTTCAGCACTCATGGTGTGCTTAGAATCATGGACGTTCGAAATAATGGTGATCTTGGCAGGTCTTTTTGCTAATGCGAAATTACAAACCTCAGTTCTTTCTATATGCCTTAACACCTCTGGTATATTTTGGATGGTACCATTTGGAGTAAGTGCTGCAGGAAGTACAAGGATCTCAAACGAATTAGGGGCTGGTAGTTCAAAAGCTGCATACTTAGCAGTTAAAGTCACCATGTTCCTGGCCTTCTTGGTGGGTCTTTTAGAATTTTCTCTCCTTATGTCCTTATGGAAAGTTTGGGGGCGTGCTTTTACCAATGTACATGAAGTGCTCACATATGTGATTTCCATGATGCCAATTGTTGCAAGCTCTGTCTTTATAGATTCAATTCAAACAGCATTTCAAGGTGTTGCCAGAGGATGTGGTTGGCAGAAACTTGGTGCATATATCAATCTAGGATCTTACTATGTTTTGGGCCTTCCTTTTTCCATTGTCACAGCTTTTGTATTCCACATGAAAGGACAGGGGCTATTTTTAGGGATCCTATTAGCACTTATTGTGCAAGTGGTGTGTTTTCTTCTGGTCACCTTACGCGCCAATTGGGAGAAAGAAGCAAAAAAGGCAGCAGCAAGAGTAGGAGGCAGTGCTGTACAAGTTGAGGACCATCAGGGTGACCAAAATGTTCATACTGCTTCATAG 1419 0.4144 MGLWKKEITEEAKKQLWLAGPMVFVCVFQYSLQMISLMFVGHLNEMLLAAVSLSTSIVNATGFNVMMGMSSALDTFCGQAYGAKQYHMLGVHTQGAMLVLTLVTIPLSILWVYLESILVLLHQNKEIAAHAQLYARYLIPSLSANGLLRCITKFLQTQNIVFPMVLATGLTSLLHLLLCWVLVQKLELGIKGSAIAICISNWFSTIILALYVRFSPSCKTTWTGFSKEALHNIPKFLRLAFPSALMVCLESWTFEIMVILAGLFANAKLQTSVLSICLNTSGIFWMVPFGVSAAGSTRISNELGAGSSKAAYLAVKVTMFLAFLVGLLEFSLLMSLWKVWGRAFTNVHEVLTYVISMMPIVASSVFIDSIQTAFQGVARGCGWQKLGAYINLGSYYVLGLPFSIVTAFVFHMKGQGLFLGILLALIVQVVCFLLVTLRANWEKEAKKAAARVGGSAVQVEDHQGDQNVHTAS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02812 472 NCBIfam MATE family efflux transporter 21 417 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst4g02812 472 CDD MATE_eukaryotic 11 447 IPR045069 GO:0042910|GO:1990961
Spst4g02812 472 Pfam MatE 242 404 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst4g02812 472 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Spst4g02812 472 PANTHER MULTIDRUG RESISTANCE PROTEIN 5 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02812 Spst-Chr4 67829690 67833982 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01368 10 14138215 14141446 Spst4g02812 4 67829690 67833982 ECH
Spst4g02812 4 67829690 67833982 Spst4g02812 4 67829690 67833982 ECH
Spst4g02812 4 67829690 67833982 Spst3g00696 3 10388206 10391556 PCT