Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02270 ATGCAAGACCCGACAGCATTTCAAGGTTTGAAACAACCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCACAAACACCAAATTCTGCTACTACAACAACTACAACCTCTCGCAGCCACGCCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTTGGGGGTGGAAGCAGAAAGAGCACAAAACGTTCATCAACCTCAAAACGCTCTTCTGCACCGACTTCCTCTGCGGTTTCCGAGGCTGACCCGAGCCGGATTTGCACCATTCCGGTTGAGCAAGACCAGAGGGTGCTCAACATAGGTGGAACCTTCAGTTCCCTCTTGGCTTCATCTGGGCACTTTGGAACCCTATTGGATGGTCTGAATCCAACTGGGTCAGGTCTCAAAATGGGTGAATTTGGGGAGGGTGTGAGTTCTGAACTGGGTTTGAATTCTGATTCGGTTTCAAACCCGGGTTTGCAGCTTCAGAGTAACGGGAGTTCAGAGGGTTTTCTAGGTCTGCAGAATGGGGAATCAACCTGTTGGAATGGTAGTCATGGTTGGTCTGATCTTGCAATATACACACCTCGCCCAAGTTTTCAATAA 624 0.4888 MQDPTAFQGLKQPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSTSKRSSAPTSSAVSEADPSRICTIPVEQDQRVLNIGGTFSSLLASSGHFGTLLDGLNPTGSGLKMGEFGEGVSSELGLNSDSVSNPGLQLQSNGSSEGFLGLQNGESTCWNGSHGWSDLAIYTPRPSFQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02270 207 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Spst4g02270 207 MobiDBLite consensus disorder prediction 70 95 - -
Spst4g02270 207 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Spst4g02270 207 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 144 IPR045174 GO:0003700|GO:0006355
Spst4g02270 207 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Spst4g02270 207 MobiDBLite consensus disorder prediction 65 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02270 Spst-Chr4 63520498 63521121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02270 12 131 C2C2-Dof Transcription Factor Family AT1G51700 56.296 5.99e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst4g02270 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02270 - - gmx:100790822 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02270 4 63520498 63521121 Spst4g02270 4 63520498 63521121 ECH