Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00431 ATGTACACTTCCAGGAAGAAAATTCTCAAGGATAAGGATGCTGAACCCACTGAATTTGAGGAGACAGTTGCACAGTACATATTTGACTTGGAGAACACCAACCAGGATCTGAAAAGTGACTTGAAGGATCTCTATATAAATCAAGCAATTCAAATGGATGTGGCCAATAATCGCAAGGCTGTAGTCATATATGTACCTTTCAGATTGAGGAAGGCATTCCACAAGATTCATCTCCGACTTGTAAGAGAGTTGGAGAAAAAATTTAGCGGGAAGGATGTTATTTTGCTTGCCACAAGGAGGATCTTGAGGCCACCAAAGAAGGGCTCTGCCGTTCAACGTCCCCGAACCCGGACATTGACTGCTGTTCATGATGCCATGCTAGAGGATGTTGTTTATCCTGCAGAGATTGTTGGCAAAAGGGTCAGATATAGAATTGATGGGTCAAAAATAATGAAGGTTTTCTTGGACCCCAAGGAGCGCAATAACACCGAATACAAACTGGAGACTTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGATTATCCAGTCACAGAAGCCTGA 576 0.4219 MYTSRKKILKDKDAEPTEFEETVAQYIFDLENTNQDLKSDLKDLYINQAIQMDVANNRKAVVIYVPFRLRKAFHKIHLRLVRELEKKFSGKDVILLATRRILRPPKKGSAVQRPRTRTLTAVHDAMLEDVVYPAEIVGKRVRYRIDGSKIMKVFLDPKERNNTEYKLETFSGVYRKLTGKDVVFDYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00431 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Spst4g00431 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Spst4g00431 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Spst4g00431 191 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00431 Spst-Chr4 5633857 5634868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00431 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.628 2.54e-114 321
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00431 4 5633857 5634868 Spst3g00696 3 10388206 10391556 ECH
Spst4g00431 4 5633857 5634868 Spst4g00431 4 5633857 5634868 ECH