Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00316 ATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGTCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGTAGCAGTTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTAAGCAAACCTGCCAAAGAACTTGAGCAGAGCAGCTATCGTGAGTACTTGAAACTGAAAGGAAGATTTGAATCTCTTCAGAGGACCCAAAGGTTAAGAAACCTTCTAGGTGAAGACTTGGGTCCGTTAAATACCAAAGAACTTGAGCAGCTTGAGAGGCAACTAGATTCATCTCTCAAGCAAGTGAGGTCCACAAAGGACTTCGAGGTTCAATCAGCTACCCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAACAGATGTTGGTAGAAGCAAACAGAGCTTTAACCATGAAGCTGGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGCCATATGGTACTCAGAATGCTCATTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAATCCCACATTGCAGATAGGTTCTGACTACAGGTACAACCCTGAAGCCTCAGATCAGCTAACTGCCACAACTCAAGCTCAACAAGTTCAACAAGTGAACGGACAAGTATTATCTGACTGA 777 0.435 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKGRFESLQRTQRLRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKDFEVQSATQFMLDQLADLQNKEQMLVEANRALTMKLDEINSRNQYRQTWEAGDQSMPYGTQNAHSQGFFQPLECNPTLQIGSDYRYNPEASDQLTATTQAQQVQQVNGQVLSD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00316 258 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Spst4g00316 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Spst4g00316 258 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst4g00316 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst4g00316 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst4g00316 258 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Spst4g00316 258 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst4g00316 258 ProSiteProfiles K-box domain profile. 88 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst4g00316 258 FunFam MADS-box transcription factor 1 13 88 - -
Spst4g00316 258 Pfam K-box region 88 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst4g00316 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst4g00316 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst4g00316 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst4g00316 258 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00316 Spst-Chr4 3674326 3679562 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst4g00316 K-box 6.9e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00316 4 3674326 3679562 Spst1g01467 1 18367206 18374702 PCT