Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04863 ATGGCATCACCATCCGAACTAAGTCTGGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCTTTCGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAGGCTTCAAGGCAGCAACTTCAGGCCTTCAAAGTAAACCATGGTGTAAAGCCAGTTCTTGAAGAATTCATACCCATGAAGCACTTAGCCTCAGAAAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCCCAACTGTGGAGCCAAGCAAGTGAAGGAACCAAAGAACAACCAACATTAACATCGTCCAAAGAAACTGATATAGGCTTCAGCATCAGCCCCAAGCTGGTTCTAGACAACAAACAGAGGAACGGTGGAGGAGCCTTCCTTCCATTCTCAAAGGAGAGAAACTCCTGCCAAGGCTCTACATTGCGACCTCTCCCTGAACTTGCCCTTGCCTCTGCAGAGAAAGAAATGGAGGATAAGAAACGTGCAGAGGTAGAAAAGGGAGTTTCATGTCAGAATAAGAAGGAGAATTCTGGCAGTGATGGAACTGTGGTTGATCAAGGAAAAAGTGGTAGCCCGGTTGCATCATCTCACGCACAAACAACAACCACCACTGCGCAAACTCATAGGAAAGCTAGAAGGTGCTGGTCACCAGACTTGCACCGTAGATTTGTTAATGCTCTCCAGATGCTTGGTGGATCACAAGTGGCAACCCCAAAGCAGATAAGGGAATTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAACCGGGTCCAGCAGCACCACAGCTCGTGGTCCTAGGCGGAATCTGGGTCCCACCGGAATATGCCACTGCCGCACACTCGGCCACCCCCACTCTCTACGGTGCCCACCCAACCTCTCACGCGCCTCCGCCACACTACTGTGCGGCCACTCCCGTGCCGCAAGAGTTTTACACTGCGGCGCCGCCGCCGCAGCTGCTTCCGCCCCCGCCGCCTCACCACAACGCGCTGCACCACCTGCACATGTACAAGGCGGCGGCACACGGCCGCGGGTCGCCCGAATCCGACGTTCCCCGCGGCGGAGATCGGTCGGAGAGCATCGAGGACGGGAAGTCGGAGAGTAGCAGCTGGAAGGGGGAGAGCGGGGAAAATGAAGGGGAGAGAAAAGGGATTGGTGAAGAGAGCAATGGGAGTGAAATCACTCTGAAATTCTAG 1353 0.5211 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGVKPVLEEFIPMKHLASESSEKATNMSDKANWMTSAQLWSQASEGTKEQPTLTSSKETDIGFSISPKLVLDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELALASAEKEMEDKKRAEVEKGVSCQNKKENSGSDGTVVDQGKSGSPVASSHAQTTTTTAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQPGPAAPQLVVLGGIWVPPEYATAAHSATPTLYGAHPTSHAPPPHYCAATPVPQEFYTAAPPPQLLPPPPPHHNALHHLHMYKAAAHGRGSPESDVPRGGDRSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF 450
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04863 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 424 IPR044787 GO:0003700|GO:0006355
Spst3g04863 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Spst3g04863 450 Coils Coil 33 53 - -
Spst3g04863 450 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Spst3g04863 450 MobiDBLite consensus disorder prediction 401 440 - -
Spst3g04863 450 MobiDBLite consensus disorder prediction 392 450 - -
Spst3g04863 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Spst3g04863 450 MobiDBLite consensus disorder prediction 186 247 - -
Spst3g04863 450 Gene3D - 243 301 - -
Spst3g04863 450 MobiDBLite consensus disorder prediction 205 244 - -
Spst3g04863 450 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Spst3g04863 450 FunFam Myb family transcription factor 243 301 - -
Spst3g04863 450 MobiDBLite consensus disorder prediction 186 204 - -
Spst3g04863 450 Coils Coil 58 78 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst3g04863 Spst-Chr3 100398122 100400476 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04863 1 450 G2-like Transcription Factor Family AT2G03500 52.282 6.73e-131 383
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst3g04863 Myb_DNA-binding 9.7e-06 CL0123
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04863 3 100398122 100400476 Spst3g04863 3 100398122 100400476 ECH
Spst3g04863 3 100398122 100400476 Spst9g02507 9 58882820 58885258 PCT