Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g04863 | ATGGCATCACCATCCGAACTAAGTCTGGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCTTTCGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAGGCTTCAAGGCAGCAACTTCAGGCCTTCAAAGTAAACCATGGTGTAAAGCCAGTTCTTGAAGAATTCATACCCATGAAGCACTTAGCCTCAGAAAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCCCAACTGTGGAGCCAAGCAAGTGAAGGAACCAAAGAACAACCAACATTAACATCGTCCAAAGAAACTGATATAGGCTTCAGCATCAGCCCCAAGCTGGTTCTAGACAACAAACAGAGGAACGGTGGAGGAGCCTTCCTTCCATTCTCAAAGGAGAGAAACTCCTGCCAAGGCTCTACATTGCGACCTCTCCCTGAACTTGCCCTTGCCTCTGCAGAGAAAGAAATGGAGGATAAGAAACGTGCAGAGGTAGAAAAGGGAGTTTCATGTCAGAATAAGAAGGAGAATTCTGGCAGTGATGGAACTGTGGTTGATCAAGGAAAAAGTGGTAGCCCGGTTGCATCATCTCACGCACAAACAACAACCACCACTGCGCAAACTCATAGGAAAGCTAGAAGGTGCTGGTCACCAGACTTGCACCGTAGATTTGTTAATGCTCTCCAGATGCTTGGTGGATCACAAGTGGCAACCCCAAAGCAGATAAGGGAATTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAACCGGGTCCAGCAGCACCACAGCTCGTGGTCCTAGGCGGAATCTGGGTCCCACCGGAATATGCCACTGCCGCACACTCGGCCACCCCCACTCTCTACGGTGCCCACCCAACCTCTCACGCGCCTCCGCCACACTACTGTGCGGCCACTCCCGTGCCGCAAGAGTTTTACACTGCGGCGCCGCCGCCGCAGCTGCTTCCGCCCCCGCCGCCTCACCACAACGCGCTGCACCACCTGCACATGTACAAGGCGGCGGCACACGGCCGCGGGTCGCCCGAATCCGACGTTCCCCGCGGCGGAGATCGGTCGGAGAGCATCGAGGACGGGAAGTCGGAGAGTAGCAGCTGGAAGGGGGAGAGCGGGGAAAATGAAGGGGAGAGAAAAGGGATTGGTGAAGAGAGCAATGGGAGTGAAATCACTCTGAAATTCTAG | 1353 | 0.5211 | MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGVKPVLEEFIPMKHLASESSEKATNMSDKANWMTSAQLWSQASEGTKEQPTLTSSKETDIGFSISPKLVLDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELALASAEKEMEDKKRAEVEKGVSCQNKKENSGSDGTVVDQGKSGSPVASSHAQTTTTTAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQPGPAAPQLVVLGGIWVPPEYATAAHSATPTLYGAHPTSHAPPPHYCAATPVPQEFYTAAPPPQLLPPPPPHHNALHHLHMYKAAAHGRGSPESDVPRGGDRSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF | 450 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g04863 | 450 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 20 | 424 | IPR044787 | GO:0003700|GO:0006355 | |
Spst3g04863 | 450 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 241 | 301 | IPR017930 | - | |
Spst3g04863 | 450 | Coils | Coil | 33 | 53 | - | - | |
Spst3g04863 | 450 | Pfam | Myb-like DNA-binding domain | 246 | 297 | IPR001005 | - | |
Spst3g04863 | 450 | MobiDBLite | consensus disorder prediction | 401 | 440 | - | - | |
Spst3g04863 | 450 | MobiDBLite | consensus disorder prediction | 392 | 450 | - | - | |
Spst3g04863 | 450 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 244 | 299 | IPR006447 | GO:0003677 | |
Spst3g04863 | 450 | MobiDBLite | consensus disorder prediction | 186 | 247 | - | - | |
Spst3g04863 | 450 | Gene3D | - | 243 | 301 | - | - | |
Spst3g04863 | 450 | MobiDBLite | consensus disorder prediction | 205 | 244 | - | - | |
Spst3g04863 | 450 | SUPERFAMILY | Homeodomain-like | 241 | 302 | IPR009057 | - | |
Spst3g04863 | 450 | FunFam | Myb family transcription factor | 243 | 301 | - | - | |
Spst3g04863 | 450 | MobiDBLite | consensus disorder prediction | 186 | 204 | - | - | |
Spst3g04863 | 450 | Coils | Coil | 58 | 78 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g04863 | Spst-Chr3 | 100398122 | 100400476 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g04863 | 1 | 450 | G2-like Transcription Factor Family | AT2G03500 | 52.282 | 6.73e-131 | 383 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Spst3g04863 | Myb_DNA-binding | 9.7e-06 | CL0123 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g04863 | 3 | 100398122 | 100400476 | Spst3g04863 | 3 | 100398122 | 100400476 | ECH | |
Spst3g04863 | 3 | 100398122 | 100400476 | Spst9g02507 | 9 | 58882820 | 58885258 | PCT |