Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04843 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCATTTCTTCAAAAGACCAAACCAATTCCAATTACGCCCTTCCTCCTCCTCCTCCTTTCTCCATTCTCCAATCCTTTGATGAAAATATCTTTCTCGAACACCACCATGACTTGCTCTTACTTCATCAGTCTCTAGCTGAGCCTGGACTCCCCAAAAACCTTGACGTTGCGGCTGAAATCGCGGCAATTCCTTGCGCCGGACAAGGTGGCGCCACCGCCATGGATCACACTACAAGGAAGAGATCCAGCAAGAGAGACCGCCACAGCAAGATCAACACAGCACGAGGCCTCAGGGACCGAAGAATGAGGTTGTCCCTAGAAGTTGCAAAGAGATTCTTCGGCTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTTGAGTGGCTACTAAACCAAGCAAAAGTTGAAATCAAACAACTTGCAAGGGAAAAAAACAGTGTTGGTGGTGCCAAGAGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGTTAACGAGGAGCAAGAGAGGGAGACACCCCACATGAAGCGAAGAACTAGTAAGGTTTGTAGAAAGAGTGCATTCAATCCTATAGATAAGGAATCGAGGGGAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAAGAGAGAAGATGAGGTCTCGGAGAGTACTTGCTGCAGATGCTTCAAACCTGAACCGTTTGAGTTCTTGGAATCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAGAGCCAAAGCGTGAATCGCCCCTCCATAGATGTTCACCTTCCTGAGGCTGAAGAACCAAGTTCTCAGGCAAAGGAGCATTTGGGAACCGTGGAAGACATGGCGCAGCATCAAGATAATTCTTTGGTGATCATGAATAAGTGGAGCCCAACCATGATGTTCAATTCTCTCAACAACTCGTCAATCCTTCAAGAACATCAATATGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAGCCTACAACGATCACATCTAG 1113 0.4708 MYSSNTSLNGNDLLSYPNQPFCFRPFSFESNPTISSKDQTNSNYALPPPPPFSILQSFDENIFLEHHHDLLLLHQSLAEPGLPKNLDVAAEIAAIPCAGQGGATAMDHTTRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSVGGAKSASSTSECEGVSSLDEVVVSGVNEEQERETPHMKRRTSKVCRKSAFNPIDKESRGKARERARERTREKMRSRRVLAADASNLNRLSSWNPFETVEDSAGTQSQSVNRPSIDVHLPEAEEPSSQAKEHLGTVEDMAQHQDNSLVIMNKWSPTMMFNSLNNSSILQEHQYAEFQSLGKPWEAYNDHI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04843 370 MobiDBLite consensus disorder prediction 177 258 - -
Spst3g04843 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 97 367 IPR005333 GO:0003700
Spst3g04843 370 MobiDBLite consensus disorder prediction 182 196 - -
Spst3g04843 370 ProSiteProfiles TCP domain profile. 116 174 IPR017887 -
Spst3g04843 370 ProSiteProfiles R domain profile. 236 253 IPR017888 -
Spst3g04843 370 MobiDBLite consensus disorder prediction 230 258 - -
Spst3g04843 370 Pfam TCP family transcription factor 115 256 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04843 Spst-Chr3 100163429 100164941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04843 1 250 TCP Transcription Factor Family AT3G18550 34.323 2.53e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst3g04843 TCP 4.8e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01535 1 19168775 19169967 Spst3g04843 3 100163429 100164941 ECH
Spst9g02441 9 57690725 57691792 Spst3g04843 3 100163429 100164941 ECH
Spst3g04843 3 100163429 100164941 Spst3g04843 3 100163429 100164941 ECH