Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04791 ATGCAGCAAATACACTCCATGGCAGCAGGAACAGGAGGAGGAGGAGGAGGAGCCAGGTTTTTCTCCGGCACCGGCGCTGCCGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGTGACTCCCTCAACACTAAGTTCTGCTATTACAACAACTATAACCTCTCCCAGCCCCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGGGGCTGCCGCAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCTGACACCGTTCCCCCTCCTCCGCCCGACCCCGACCATTCCAGCAGCGAGAGCTCCAGTCTCACCGCTACCGCTGCTGAGACCGTGTCGGCACCGATAAACTCGGATTCCACCAACGTGCAAGAGTCGAAGTTGTTGGTCCCCGTGGAGCCTGTTTTGGAAACGAATCCTCTGGACCAAGGGGCAGGGGACTGCGGTGGTATCTTCTCTGAGATTGGACCTTTCACCAGTCTGATCGCTACTTCCACTAACGAGCCATTGGCTTTCGGTTTCGGCAACGCTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCATCCGAAGTTGACCGGCAACCACGAATTGAAGCTCCCCGAAAGCTCCTTGCTCGATCACACGGTTGATTTGTCGGCTCTGCATAGTAAAACCAACAACGGAACTTTCGGATCTTTGGATTGGCAGGGTGGTGCGGATCAAGGTTTGTTTGATCTCCCCAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTTCATCTCCCCTGA 855 0.5708 MQQIHSMAAGTGGGGGGARFFSGTGAADRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDTVPPPPPDPDHSSSESSSLTATAAETVSAPINSDSTNVQESKLLVPVEPVLETNPLDQGAGDCGGIFSEIGPFTSLIATSTNEPLAFGFGNALPDASSFQWQHPKLTGNHELKLPESSLLDHTVDLSALHSKTNNGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04791 284 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Spst3g04791 284 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Spst3g04791 284 MobiDBLite consensus disorder prediction 86 139 - -
Spst3g04791 284 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Spst3g04791 284 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 198 IPR045174 GO:0003700|GO:0006355
Spst3g04791 284 MobiDBLite consensus disorder prediction 116 139 - -
Spst3g04791 284 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04791 Spst-Chr3 99619344 99620198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04791 28 281 C2C2-Dof Transcription Factor Family AT5G60850 45.614 4.79e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g04791 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04791 - - gmx:778097 405.216