Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04706 ATGTACGAAAATAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAACAAGACGACGAGGGTGCTCATGGAACAGAGCAAGAGATAGAAGAGGATAAAGACCAAGGAGACAAGAAAAGGGTACTTTGTACTGTGGAGTATCGTAAGAATGGTTCAAGTGGGATTTTCATTGATCTTGCGTATGTTCTTCGTGCTATGATTGATGCTGTTGTTGAAGATTTTACTGAGGAAGAGCGAGAAGCTGATCCTCCTCCAAGTGCTGGGGAGACTAAAGATTCGGGTACATCCCCTGAGGCTATTGTGAACCCCAAAACACCCTCCATAGAAGAAGACACCGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCAGCCAATTCAGAGGAGAAAACTCTGAAGAAACCTGATAAAGTGCTACCGTGCCCCCGCTGCAAAAGTATGGATACTAAATTTTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGAAATGTTCCCGTGGGGGCAGGACGGCGAAAGAACAAGAACTCTGCCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCTGCCAGAATTGATTCTCCTAATGGAACTCATCTTCCAACTTTGAAAGACAATGGTAGAGTTCTGAGTTTTGGATTAGATGCACATGCACCAATTTGTGATTCCATGGCATCTGTACTCAATCTAGGAGAGAAAAAGGTTCCTAATGGCACCAAAAATGGGGTTCATCCTGGCTTTGAGGATCAAAGACTTCCTATTCCTCGCAAAAGTGGGGAAAATGGGGATGACTCTTCAACTACATCTTCCATTACAGTTTCAAATTCCATGGGAGAAATTAGCAAAAGCACCTTCCAACCACAACCGGTGCTCCAAAATCATGGTTTCCTTCCTCAACTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCAGTTCCCCCACCTGCTTTGTGTCCTTCAGGATTTCCCTTACCATTCTATCCTCCTCCTGCATTATGGAACTGTGGCATGCCAGGGAATTGGAATGTTCCATGGTTTTCGTCACTTTCATCTGCTTCAAACCCAAACTCTCCGACTTTGGGGAAGCACTCGCGGGATGGGGACATGATTAAGCAAGACTCTTTGCCCAAAGAAGAAGCTTCAAAGCCAAGAAACGGACGTGTTTTGGTTCCAAAAACGTTGAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGTATTAAGAATGAGTCGGTGAGTGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGAACGAAAAGAACCGTGTTGAAGCCTCTCCAGTCTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA 1482 0.4494 MYENRDPAIRLFGQKIPFPEDVDIEQDDEGAHGTEQEIEEDKDQGDKKRVLCTVEYRKNGSSGIFIDLAYVLRAMIDAVVEDFTEEEREADPPPSAGETKDSGTSPEAIVNPKTPSIEEDTAKSKADKSEKEQGDAANSEEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLPTLKDNGRVLSFGLDAHAPICDSMASVLNLGEKKVPNGTKNGVHPGFEDQRLPIPRKSGENGDDSSTTSSITVSNSMGEISKSTFQPQPVLQNHGFLPQLPCVPWPYTWNSPVPPPALCPSGFPLPFYPPPALWNCGMPGNWNVPWFSSLSSASNPNSPTLGKHSRDGDMIKQDSLPKEEASKPRNGRVLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGGMFKAFQSKKNEKNRVEASPVLMANPAALSRSLNFHENS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04706 493 MobiDBLite consensus disorder prediction 397 418 - -
Spst3g04706 493 ProSitePatterns Zinc finger Dof-type signature. 153 189 IPR003851 GO:0003677|GO:0006355
Spst3g04706 493 MobiDBLite consensus disorder prediction 29 45 - -
Spst3g04706 493 MobiDBLite consensus disorder prediction 84 150 - -
Spst3g04706 493 MobiDBLite consensus disorder prediction 18 45 - -
Spst3g04706 493 PANTHER CYCLIC DOF FACTOR 2 4 493 IPR045174 GO:0003700|GO:0006355
Spst3g04706 493 MobiDBLite consensus disorder prediction 268 304 - -
Spst3g04706 493 MobiDBLite consensus disorder prediction 118 150 - -
Spst3g04706 493 ProSiteProfiles Zinc finger Dof-type profile. 151 205 IPR003851 GO:0003677|GO:0006355
Spst3g04706 493 Pfam Dof domain, zinc finger 148 205 IPR003851 GO:0003677|GO:0006355
Spst3g04706 493 MobiDBLite consensus disorder prediction 385 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04706 Spst-Chr3 98856711 98859221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04706 1 491 C2C2-Dof Transcription Factor Family AT3G47500 46.050 3.57e-119 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g04706 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04706 - - gmx:778113 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04706 3 98856711 98859221 Spst9g02364 9 55934610 55937135 ECH
Spst3g04706 3 98856711 98859221 Spst3g04706 3 98856711 98859221 ECH
Spst3g02390 3 67884812 67888050 Spst3g04706 3 98856711 98859221 ECH
Spst2g01741 2 16363553 16366505 Spst3g04706 3 98856711 98859221 PCT