Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04567 ATGGGTTTTTCCTCTCTCCACGTCCGCATGGACTCATCAGATCACTGGCTGCAGGGCACAATTCACGAGGAGTGTGGGGTAGATTCTTCTTCACCATCTGGCGACATGCTTCCATGCTCGAGACCAATGACAGAGAGGAGGCTAAGACCCCCACAAGAGCAAGCCATCAAGTGCCCTAGGTGTGAATCGACACATACCAAGTTCTGCTACTACAACAACTACAGTCTCTCCCAGCCCAGGTATTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTTAGAAACATTCCTGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTTTCTACCAAGAAACACAATGACCACCAACCAGCTATTAATCAAAACCAAACTCACTCTGCAGGACCCTCTCATCTTCATAATCACAAAGATCTTCAACATCCCTTCCTAGATGTGCAATTTTCCCACCTCAACAATTTACTTGGGACTAATGCTGGGGTACTGGGAAACCCTAATTTCATGGAGGGTAAGTATAACACCGGAATGCTTGAGAACCCTAGGCCTATTGACTTCATGGACAGTGGGTTGGATGGTATGCATATGATCAGGGGTTCTACTAGGAGTTTTGATCTTCTTGAAAACAATGATATGAGTGTGGGTAGTGGTGTTGAGCTTGGTGATAAGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCTTCTGCAGCATTTGGAGGCATTTCCCTTGATGGAAGCATTAGCAATGTTGGAACATATATGATGGACTCTTGCCAGCGACTTATGTTGCCCTATGATGGAGGTGATAACATCCTTAACGTTTCAATTGATGTGAAGCCAAACCCAAAGCTATTGTCCCTTGAATGGCAAGATCAAGGTTGCTTTGATGCTGAAAAAGTGTCATTGGGATATCTTAACGGTTCAGGATCATGGGCCGGCTATGGATCTTCCACAACAAACCATTTGGTTTAG 987 0.4488 MGFSSLHVRMDSSDHWLQGTIHEECGVDSSSPSGDMLPCSRPMTERRLRPPQEQAIKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDHQPAINQNQTHSAGPSHLHNHKDLQHPFLDVQFSHLNNLLGTNAGVLGNPNFMEGKYNTGMLENPRPIDFMDSGLDGMHMIRGSTRSFDLLENNDMSVGSGVELGDKSGYNGLPLNYQGLSSAAFGGISLDGSISNVGTYMMDSCQRLMLPYDGGDNILNVSIDVKPNPKLLSLEWQDQGCFDAEKVSLGYLNGSGSWAGYGSSTTNHLV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04567 328 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Spst3g04567 328 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Spst3g04567 328 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Spst3g04567 328 MobiDBLite consensus disorder prediction 118 133 - -
Spst3g04567 328 MobiDBLite consensus disorder prediction 106 139 - -
Spst3g04567 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 155 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04567 Spst-Chr3 97366994 97368630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04567 1 300 C2C2-Dof Transcription Factor Family AT5G62940 40.841 4.96e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g04567 zf-Dof 4.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04567 - - gmx:100815061 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04567 3 97366994 97368630 Spst9g02200 9 49229921 49231374 PCT