Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04065 ATGAGGAGAAGGAGTAGAGATGACTTGTGTAAAGGGAACAACCTAAGAGGCGACGCGTGTCCAATTACAGCTGTATCCCAACTCCAGAGGCAACCGCTTCCCAGCAAAGAAACCCTTCCCATTCTCTTCATCAAACCATTACAGAATAACACCATGATGGCAGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCGGAAGAGGACGAGGCCTTGCAGAAGCTGGTAGAGAGGCTCGGACCGAGAAACTGGACGGCCATCAGCAGGTCAATCCCAGGCCGCTCTGGAAAATCCTGCAGACTCCGATGGTGCAACCAGCTCTCACCCCAGGTCGAGCACCGGGCCTTTACGCCTGAAGAGGACGACAAGATAATCCGGGCCCATGCCCGCTTCGGGAACAAGTGGGCCACCATAGCCCGCCTCCTCTCGGGCCGCACCGATAACGCCATCAAAAACCACTGGAACTCAACCCTAAAACGCAAGTGCGCCTCCATCATGATCGCAGACGATCCCGCCGCCGCCGCTGCCGGTTTCAGTCCGCAGCCGCTCAAGCGCTCCTTCAGCGCCGGTGCTGCTCTGCCCCCGGGTAGCCCCTCCGGATCCGATGTGAGTGAGACCAGCGCCCCCGGGGTAGTCTCCCCATCGCACGTCTTCCGGCCTGTGCCGGTTCGACCGGTGGTGGAGACGGCGTCGTCATGCGACGACGGACCTACCACTTCACTGTCGCTGTCTCTTCCCGGCGTGGAGTCATCCGATACCTCGAATCGGACGACAACGGTGCCAGCAAATCCCGTTCCAGTGGTGGTGCCGATGGCCACCGTGGCGACTTCTGCAGCAGAGGTTGGGTTGGGATCGTTGAATTTTAGTGCGGAGTTTATGTCGGTGATGCGTGAGATGATAAGGAAGGAGGAGTTTATGGCGTTGATGCATGAGATGATTAGGAAGGAGGTTCGAAATTACATGGAACAGCAGAATGGGATGTGTTTCCAGGGTGTGGATGGGTTTAGGAACATGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCTTAA 1062 0.5697 MRRRSRDDLCKGNNLRGDACPITAVSQLQRQPLPSKETLPILFIKPLQNNTMMAVSRKDMDRIKGPWSPEEDEALQKLVERLGPRNWTAISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDKIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMIADDPAAAAAGFSPQPLKRSFSAGAALPPGSPSGSDVSETSAPGVVSPSHVFRPVPVRPVVETASSCDDGPTTSLSLSLPGVESSDTSNRTTTVPANPVPVVVPMATVATSAAEVGLGSLNFSAEFMSVMREMIRKEEFMALMHEMIRKEVRNYMEQQNGMCFQGVDGFRNMSVKRIGISRVDS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04065 353 SUPERFAMILY Homeodomain-like 61 157 IPR009057 -
Spst3g04065 353 CDD SANT 118 161 IPR001005 -
Spst3g04065 353 Pfam Myb-like DNA-binding domain 64 110 IPR001005 -
Spst3g04065 353 Pfam Myb-like DNA-binding domain 118 160 IPR001005 -
Spst3g04065 353 MobiDBLite consensus disorder prediction 235 262 - -
Spst3g04065 353 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Spst3g04065 353 Gene3D - 63 115 - -
Spst3g04065 353 FunFam Transcription factor MYB44 118 164 - -
Spst3g04065 353 CDD SANT 66 108 IPR001005 -
Spst3g04065 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 165 IPR017930 -
Spst3g04065 353 SMART sant 115 163 IPR001005 -
Spst3g04065 353 SMART sant 63 112 IPR001005 -
Spst3g04065 353 PANTHER MYB PROTEIN-RELATED 64 245 - -
Spst3g04065 353 MobiDBLite consensus disorder prediction 190 218 - -
Spst3g04065 353 Gene3D - 117 174 - -
Spst3g04065 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 114 IPR017930 -
Spst3g04065 353 MobiDBLite consensus disorder prediction 231 262 - -
Spst3g04065 353 ProSiteProfiles Myb-like domain profile. 59 110 IPR001005 -
Spst3g04065 353 FunFam MYB transcription factor 64 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04065 Spst-Chr3 91587690 91588900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04065 56 352 MYB Transcription Factor Family AT4G37260 50.000 1.58e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g04065 Myb_DNA-binding 1.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04065 3 91587690 91588900 Spst3g04065 3 91587690 91588900 ECH
Spst9g00495 9 4456494 4457276 Spst3g04065 3 91587690 91588900 ECH
Spst8g02201 8 31776119 31776940 Spst3g04065 3 91587690 91588900 ECH
Spst3g04065 3 91587690 91588900 Spst3g02165 3 60356600 60357556 PCT
Spst3g04065 3 91587690 91588900 Spst3g04065 3 91587690 91588900 PCT