Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04062 ATGGCTCTTGGTGACGATGCACAGCACCACTCTCCCTCGATCCTCGATACTCTTCTATGTGAAGAGCGTGACACCTTTGAAGAAGATTTCGATGGGAACGGTGGTGAGTGTGAAACCAACATCGATATTCCATCTGGGGGAAAGTCGCAATCTTTGCCTTTGGCTTTGCTTGAGAATGATCTGTTTTGGGAGGACGAAGAACTTGTGTCGTTAATCTCAAAAGAGGGAGAGACCCATCTGTGTTCTCTTAGTGCCATTGCTGATGGGCCCTTAGAAGGGTGTCGTCTCCAGGCTGTGAACTGGATTTCAAAAGTTTGTGGACATTATGGGTTCTCTGCTTTGACCACTGTTCTTGCCGTCAACTACTTTGATCGGTTCATCCCAAGATTGATGGTTCAGAGGGACAAGCCGTGGATGACGCAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGCAAAGATTGAAGAGACCCATGTGCCGCTTCTTTTGGACCTTCAAGTGGAGGAATCGAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTTCTGGTGTTGTCAACCCTTAAATGGAGGATGCATCCTGTGACTCCTATTTCTTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATTTGACTGTGGATTCAAGGGCTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACCATGATCCATGTTATTAAAGAGATTGAATCATTTAACGCTACCAAGTACATTGACCAGCTTCTGGGTTTACTAAAGATTAACGAGGAACAAGTGAACCAGTGCTACAAGCTCATGCAGAAACTATTAGGTGGCAATGAAGGCATTTACAGCCTTCACCAAAAACGCAAGTATCTGTCTGTACCAAGTAGCCCAGGTGGTATTCTTGATTCATCTTTCAGTTGTGAAAGCTCAAATGGTTCATGGGCGTTGTCATCATCAGTCTCTCTCTCACTGGAGCCGCAGTTTAAGAGAAGAGCTCAGGACCAGCAAATGCGATTGCCTTCTGTCAGTCGTGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1113 0.4537 MALGDDAQHHSPSILDTLLCEERDTFEEDFDGNGGECETNIDIPSGGKSQSLPLALLENDLFWEDEELVSLISKEGETHLCSLSAIADGPLEGCRLQAVNWISKVCGHYGFSALTTVLAVNYFDRFIPRLMVQRDKPWMTQLTAVACLSLAAKIEETHVPLLLDLQVEESKYVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNLTVDSRAMSYLPSTLAAATMIHVIKEIESFNATKYIDQLLGLLKINEEQVNQCYKLMQKLLGGNEGIYSLHQKRKYLSVPSSPGGILDSSFSCESSNGSWALSSSVSLSLEPQFKRRAQDQQMRLPSVSRVSIDVLNSPR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04062 370 FunFam CYCLIN D32 196 285 - -
Spst3g04062 370 SUPERFAMILY Cyclin-like 179 292 IPR036915 -
Spst3g04062 370 CDD CYCLIN_AtCycD-like_rpt1 94 192 - -
Spst3g04062 370 SMART Cyclin_C_2 197 325 IPR004367 -
Spst3g04062 370 PANTHER CYCLINS 86 295 IPR039361 -
Spst3g04062 370 FunFam D3-type cyclin 88 195 - -
Spst3g04062 370 Gene3D - 93 195 - -
Spst3g04062 370 Pfam Cyclin, C-terminal domain 197 306 IPR004367 -
Spst3g04062 370 SUPERFAMILY Cyclin-like 63 195 IPR036915 -
Spst3g04062 370 Pfam Cyclin, N-terminal domain 93 194 IPR006671 -
Spst3g04062 370 Gene3D - 196 285 - -
Spst3g04062 370 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
Spst3g04062 370 SMART cyclin_7 100 188 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04062 Spst-Chr3 91515254 91516710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g04062 7 360 Core Cell Cycle Gene Families AT5G67260 50.276 1.35e-105 314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04062 3 91515254 91516710 Spst3g04062 3 91515254 91516710 ECH
Spst8g02193 8 31652234 31653922 Spst3g04062 3 91515254 91516710 ECH
Spst3g04062 3 91515254 91516710 Spst10g01325 10 13795246 13796920 PCT
Spst3g04062 3 91515254 91516710 Spst3g04062 3 91515254 91516710 PCT