Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04055 ATGGCTTCTTCAATGGCCATTATACCCACCCTGCTCTTCCTTTCCCTCACTCTGTCACATGCTACGGACACGCCCATCGTGAAATACTCAGAAAAAGAGGTGATGGGGATGTACGAGGAGTGGTTGGTGAAGCAGCAAAAGGTGTACAATGGGTTGGGAGAGAAGGAGAAGAGGTTTGAAGTGTTCAAGGACAACTTGGGATTCATACAAGAGCACAACGCTCAGAACAACACATACACGCTTGGGTTGAACAAGTTTGCTGATATCACCAATGAGGAATACCGTGCCATGTATTTGGGCACCAAATCTGATGCCAAACGTAGGCTCATGAAAACCAAGAGCACCGGTCACCGGTATGCCTACAACTCCCGTGACCGGTTGCCGGTGCATGTGGATTGGAGGTCCAAAGGCGTTGTTGCTCCGATCAAAGATCAGGGAAGTTGTGGAAGTTGTTGGGCCTTCTCAACAGTAGCCAGTGTGGAAGCTATAAATAAGATAGTGACAGGGAAGTTTGTGTCCCTATCAGAACAAGAACTTGTGGACTGTGACAGAACCTACAATGATGGATGCAATGGTGGCCTCATGGACTACGCATTCCAGTTCATCATTGAAAATGGTGGCATAGACACAGACGAAGATTATCCATATCAGGGTTATGACGGCACTTGTGATCCAACTAAGGTCACTAAAAACGCCAAGGTAGTCCAAATTGATGCTTTCGAGGATGTTCCAGCATATAACGAGAATGCCTTAAAGAAAGCTGTTGCTCATCAACCTGTCAGCGTTGCTATTGAAGCCTCTGGCAGGGCTTTGCAACTTTATCAATCTGGTGTGTTTACTGGTAAATGTGGAACAAGCTTAGATCATGGTGTGGTGGTTGTTGGATATGGGTCTGAAAATGGTGTGGATTACTGGCTGGTGAGGAATTCGTGGGGCACTGGATGGGGTGAGGATGGCTATTTCAAGATGGAGCGGAACTTGAGAAGCACCTCCAGAGGCAAGTGTGGAATTGCAATGGAGGCTTCCTACCCTGTTAAGAATGGCCTAAGCTCTGTTGTTCCTAGTTCAGTTTATGAAAGCACTGTGGCGTCTGTTAGCAGTGCCTGA 1107 0.4715 MASSMAIIPTLLFLSLTLSHATDTPIVKYSEKEVMGMYEEWLVKQQKVYNGLGEKEKRFEVFKDNLGFIQEHNAQNNTYTLGLNKFADITNEEYRAMYLGTKSDAKRRLMKTKSTGHRYAYNSRDRLPVHVDWRSKGVVAPIKDQGSCGSCWAFSTVASVEAINKIVTGKFVSLSEQELVDCDRTYNDGCNGGLMDYAFQFIIENGGIDTDEDYPYQGYDGTCDPTKVTKNAKVVQIDAFEDVPAYNENALKKAVAHQPVSVAIEASGRALQLYQSGVFTGKCGTSLDHGVVVVGYGSENGVDYWLVRNSWGTGWGEDGYFKMERNLRSTSRGKCGIAMEASYPVKNGLSSVVPSSVYESTVASVSSA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04055 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 287 297 IPR025660 -
Spst3g04055 368 FunFam Cysteine protease 1 20 347 - -
Spst3g04055 368 Pfam Cathepsin propeptide inhibitor domain (I29) 38 94 IPR013201 -
Spst3g04055 368 SUPERFAMILY Cysteine proteinases 31 345 IPR038765 -
Spst3g04055 368 Pfam Papain family cysteine protease 127 345 IPR000668 GO:0006508|GO:0008234
Spst3g04055 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Spst3g04055 368 Gene3D Cysteine proteinases 18 347 - -
Spst3g04055 368 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 344 IPR013128 GO:0008234
Spst3g04055 368 SMART pept_c1 127 345 IPR000668 GO:0006508|GO:0008234
Spst3g04055 368 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Spst3g04055 368 PRINTS Papain cysteine protease (C1) family signature 289 299 IPR000668 GO:0006508|GO:0008234
Spst3g04055 368 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Spst3g04055 368 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Spst3g04055 368 SMART Inhibitor_I29_2 38 94 IPR013201 -
Spst3g04055 368 CDD Peptidase_C1A 128 344 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04055 Spst-Chr3 91492051 91494099 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00489 9 4386677 4388814 Spst3g04055 3 91492051 91494099 ECH
Spst8g02189 8 31591597 31596068 Spst3g04055 3 91492051 91494099 ECH
Spst3g04055 3 91492051 91494099 Spst3g04055 3 91492051 91494099 ECH