Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03643 ATGTGCCATTTGGTTCTTTTCTCGATTTGGCAAGTAAACAGATTTGTGGTGTCCATGGTTGTGGGATATGTTGTTTGTTTCTTGAGCCATCTTAAGACACTTTTTTGGGTCCAAAGTGAATGGGTTCCATACGACGGAGGCATGTCCCAAGTTAGAGATGCTGCAATAAAGCTTTTTGGAGCAGATATTCATAATATCCATATCCCCTTTAAGCCAACAACTTCATTCACAGATTTACACTCTTTGACTCAGATTCAGTCTCTGCCTCAACCCATCATCATCATGAATGGGCTTGAAGAATCAACTAATGATGAAATGGGTGTTCCTTTGAATGAAGAAGTATGTAGCAAACAGACTGATCCTCAAGAAGATGGTAATGATACTCCGAGAAAGATATATAAAAATCCTACACAAAAACTGGTGGATAAAGTAGCTCATAGGACAAATGAGCACAGGAATGCTAAAAGAAATATTGATCATCAAGAAAAAGTTTTCAAGAAGCCAGACAAGGTCCTGCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGATGGAGGGGCGATTAGAAACGTTCCTGTTGGGGCTGGTAAGCGAAAGAACAAGTACTCAGCCCTGCAGTATTGTCAGATACCTGTGACTCCTGATGCTGCATCTGTGATCCAGACACATTCCAATGCTTCTACTGATGAGATGATTCTCTCATCTAATGAACTTTCTGTGACTTCAGGACCTATCAAAGGAAGAGATGAAACTCCTCTTAGTGAATCTTTAGAAACTGTTTTAAGTCTCAATGGCCAAAGAAAAATTGATGTAGACTTTTCCACTATCAAAGATGATGGTGAGGACCCTTCCAGTTCTTCGATGAGATCTAATGAAATAGAGCAGGTTGGTTTGGCACAACACTCTAATGGTTTAATTCCTTTACACTCATTTCATTATCATGCTGTCCCTTCATGGTCTTACCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGCCTAGTAGCACAAGTTCTAGACCTGCTTACTCGGGTGGTTCTCCAACCATGATGGCAGTTTCGGGCTTCTCCATACCAACAGTAATACTACCTGCTGCACCCTATTCTTATTCAGGTTTCATGTCAAGCTTGACTGGCCAAAAGGAAGAATCTTCGTCGATAGGATCTGCATTTAGTGGCATCTCATTGTCTTCTTCTTCAGTTAGCAACAGCACTTGTTCTGGTAATAGATCCCCAACCTTGGGAAAACATTCTAGAGATGGAAGTACACTGAAGGAAGTTGCAATGAAACAGAATCTTTGGGTGCCCAAGACTGTAAGAATTAATGGCCCTGAAGAGGCTGCAAAGAGTTCTATATGGACAACTTTGGGAACAAAATCTGAACAGAACAAAATCATTATGAAAGGAAGTGTCTTTAAATCATTTGAATCTAAGTCAAGTGCTGATGATAATCGAATTCTAAGGACAAACCCTGCTGCTTTCTCACGCTCTGAATCTTTTCAGGAAAGCATGTGA 1587 0.4014 MCHLVLFSIWQVNRFVVSMVVGYVVCFLSHLKTLFWVQSEWVPYDGGMSQVRDAAIKLFGADIHNIHIPFKPTTSFTDLHSLTQIQSLPQPIIIMNGLEESTNDEMGVPLNEEVCSKQTDPQEDGNDTPRKIYKNPTQKLVDKVAHRTNEHRNAKRNIDHQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTDGGAIRNVPVGAGKRKNKYSALQYCQIPVTPDAASVIQTHSNASTDEMILSSNELSVTSGPIKGRDETPLSESLETVLSLNGQRKIDVDFSTIKDDGEDPSSSSMRSNEIEQVGLAQHSNGLIPLHSFHYHAVPSWSYQWNPCWNVKEFRPSSTSSRPAYSGGSPTMMAVSGFSIPTVILPAAPYSYSGFMSSLTGQKEESSSIGSAFSGISLSSSSVSNSTCSGNRSPTLGKHSRDGSTLKEVAMKQNLWVPKTVRINGPEEAAKSSIWTTLGTKSEQNKIIMKGSVFKSFESKSSADDNRILRTNPAAFSRSESFQESM 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03643 528 MobiDBLite consensus disorder prediction 424 442 - -
Spst3g03643 528 PANTHER CYCLIC DOF FACTOR 2 48 527 IPR045174 GO:0003700|GO:0006355
Spst3g03643 528 MobiDBLite consensus disorder prediction 424 445 - -
Spst3g03643 528 Pfam Dof domain, zinc finger 169 225 IPR003851 GO:0003677|GO:0006355
Spst3g03643 528 ProSiteProfiles Zinc finger Dof-type profile. 172 226 IPR003851 GO:0003677|GO:0006355
Spst3g03643 528 ProSitePatterns Zinc finger Dof-type signature. 174 210 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03643 Spst-Chr3 86457897 86460616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03643 137 527 C2C2-Dof Transcription Factor Family AT5G39660 36.867 6.03e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g03643 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03643 - - vun:114177215 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03643 3 86457897 86460616 Spst3g03643 3 86457897 86460616 ECH