Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02390 ATGTGGGGGAATCCAACAGCACACAAAGATCTCATAGGCCACAAGAACTTGTGGCTCACAAAATTCCCCTCTTTTTCTGAGAAAGAGAAGGAGCAAGCCAGCAACAACAAGAGAGATATTCCTGACCCTGACCCTGACCCTCATCACCGTTTTTATAACTCAGGAATGTCAGAAGTTAAAGACTCTGCGATAAAGCTCTTTGGAAGGACAATTTCCCTGTCACACCATGATTCTTCTGTACCTCAGCGTCTCTCTTGTTGTCCTTCATCTTCGTCTTCTCTCCCGCAAGTCACCTCTGCACCACAACACCACCAAGAAGACGAGGAACCATTAAGGAAAGAACTTACCTCACTTGAAGATGATGATGCCTCATCACATAAAACCACAGAAGATTTAAAATCTCCTACAACATCCTCAGGCATACTCGAGAATCCTAAGACTCCCTCAGTGGAAACAGAGACATCACTGATGAAATCCCCTGCAAATGGAGAACAAAGCGAGACTAGTGCTTCTGAAGAAAAAACACCGAAGAAACCTGACAAGGTACTTCCATGTCCACGTTGCAATAGCATGGAAACCAAATTCTGCTATTACAACAACTACAACGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCAGGAGGAACAATGAGGAATGTGCCGGTGGGGGCTGGTCGCAGAAAAAACAAGAACACTTCAGCGGCTGCATCACATTACGGGAACATAATGATCCCGGAAGCACTCCAAGGTGCTACACTCAATGTCTCCAATGGATTGCATAATGCCCTTTTGGGAAACGGAGCAGCTGTGTTGAGTTTTGGTCCTGATTCCCCTCTCTGTGATTCCATGGCTTCTGTTTTGAACATTGCTGAGCGAGCACAAAGTTGTGTATCAAATGGGTTTCATGCAAATGAGACAAATAGTTTTGTTTCCTTTAGTAAGGAAGGTGATGGGGGTGCTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAACTTCCAGCCATAGTGGCTCACATGAAACAGTGGATAAAAGAGTTGAAGGTTTCACTCCTCAATTACCATACTTCTCAAGTGCCCCTTGGCCATATCCTATGCCTCCTCCTACATTCTGCCCACCAGGCTACCCTTTATCATTCTATCCTACACCAGCATATTGGGGTTGTATACCACCCTCTTGGAATATGTCATGTATCACACCCCAATCTTCTGTTAACAACTCTGTCTCTGCCCCTACTTTGGGGAAACATTCTAGGAATGGGAAAATCATCACCTCATCCAATCCACAGAAAGAAATGCGTGATGTAGATTCAGAACACAATTTCTTGATCCCCAGGACTCTAAGAATTGATGACCCTAGTGAAACTACAAAGAGTTCCATGTGGTCAAAACTAGGAACCAAGGATGACAAGGCCAGTTCTGGAGGCCTTTTCAAAGCATTTCCATCCAAGGGAAATGGCACGAATCACATGGTTGAAGCATCATCAGTGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACAAACCTGA 1563 0.4485 MWGNPTAHKDLIGHKNLWLTKFPSFSEKEKEQASNNKRDIPDPDPDPHHRFYNSGMSEVKDSAIKLFGRTISLSHHDSSVPQRLSCCPSSSSSLPQVTSAPQHHQEDEEPLRKELTSLEDDDASSHKTTEDLKSPTTSSGILENPKTPSVETETSLMKSPANGEQSETSASEEKTPKKPDKVLPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSAAASHYGNIMIPEALQGATLNVSNGLHNALLGNGAAVLSFGPDSPLCDSMASVLNIAERAQSCVSNGFHANETNSFVSFSKEGDGGAHSTGVSVSTTSTSSHSGSHETVDKRVEGFTPQLPYFSSAPWPYPMPPPTFCPPGYPLSFYPTPAYWGCIPPSWNMSCITPQSSVNNSVSAPTLGKHSRNGKIITSSNPQKEMRDVDSEHNFLIPRTLRIDDPSETTKSSMWSKLGTKDDKASSGGLFKAFPSKGNGTNHMVEASSVLQANPAALSRSLTFHEQT 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02390 520 MobiDBLite consensus disorder prediction 102 129 - -
Spst3g02390 520 ProSiteProfiles Zinc finger Dof-type profile. 183 237 IPR003851 GO:0003677|GO:0006355
Spst3g02390 520 MobiDBLite consensus disorder prediction 130 169 - -
Spst3g02390 520 MobiDBLite consensus disorder prediction 414 436 - -
Spst3g02390 520 ProSitePatterns Zinc finger Dof-type signature. 185 221 IPR003851 GO:0003677|GO:0006355
Spst3g02390 520 Pfam Dof domain, zinc finger 180 237 IPR003851 GO:0003677|GO:0006355
Spst3g02390 520 MobiDBLite consensus disorder prediction 24 55 - -
Spst3g02390 520 MobiDBLite consensus disorder prediction 414 440 - -
Spst3g02390 520 MobiDBLite consensus disorder prediction 77 101 - -
Spst3g02390 520 MobiDBLite consensus disorder prediction 77 180 - -
Spst3g02390 520 MobiDBLite consensus disorder prediction 328 343 - -
Spst3g02390 520 MobiDBLite consensus disorder prediction 23 56 - -
Spst3g02390 520 PANTHER CYCLIC DOF FACTOR 2 56 519 IPR045174 GO:0003700|GO:0006355
Spst3g02390 520 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02390 Spst-Chr3 67884812 67888050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02390 59 518 C2C2-Dof Transcription Factor Family AT5G39660 38.000 2.31e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g02390 zf-Dof 5.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02390 - - gmx:100813315 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02390 3 67884812 67888050 Spst3g02390 3 67884812 67888050 ECH
Spst3g02390 3 67884812 67888050 Spst3g04706 3 98856711 98859221 ECH
Spst3g02390 3 67884812 67888050 Spst9g02364 9 55934610 55937135 ECH