Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02363 ATGGAGGAAAGGAAGTATGTGTGCAAGTATTGCAGCAAAAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGAACCCATATGACTGAAGAAAGAAGTAATGCTGACGCTGACATGTTCATCAAGTCGGATGGTGTGAGGAAGAAGAGAGATTTATGGTGTGAAGATGTAGTTGGGAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGTGGTGCCAGGGCCAACTATGAACAGGGGGAGAGGTTCTGCAAAGAATGTGGAAAAGGTTTTCCATCACTGAAGGCTCTCTGTGGTCATATGGCTTGTCACTCAGAGAAGGAGAAGAGAACCATCAAGTTTGAAGACAGTGATAAGAAACTGAAATTGGTTATGGATAGTCAATCTGACACAGAGACTTCTGCTCCATCGCATCCAAGGAGATCCAAAAGAATGAGGGTGAAGACCATTAACCTTTCCGATCAACCTTTTTCTTCTTCTTCTTCTGTTTTTCCGTTGGCCCATGGCTCTTCACCCGTGTCAGAGGTGGAGCAGGAGCAAGAAGAGGTGGCTAGGTGCTTGATGATGCTGTCTAGAGATTCTAGCTTTAAGGGTCGTTTTGCTTCTGTTACTGAATGTTCTGATAACAACTCGGTTATTGTAGAAGCAAAATCATCCTCTCCTGATACACGGATTGGTGTCAGCAATGGTAATTATAACAACTTTCTTTCTAATAATACTTGTGATCTTGTTGACAAGAAGTTTCTTAGGTTTAAGGATATCAAGTTGAAGTCTGTTGAGTTAGGTGCTTCTGATAATTCAGGTTCTAGATATTTCAAACATAGTCCCAAAACCAAAATTGTAGACTCGGATGTCTCAAATGAAGAATTTAAGTGGCCCAAAGTGGGAAAAAAGTCAAGCAAATACAGTGCAACTACAGTAAAGAAATTAGTGATGGAGGATTTGGATTATGATAGAACAGATGAAACTGCAAGGAAGTTTGATTCAAGAAAGAGAAGCAATTATGACTCTTTTAATCACAATCTAGTTGGGGGTTCTATCAAGAAGGTAGCAAACGGTTTCGGTAACGAAGTAAATGGGAATGACACAAAAGATTGGAAGTATGATTCTTTGGAGGGTGAAAGGGACTATGGTTCTTATGATTCCATAGAGGAGAGCCATGAAAACAGTTCAGAGACAGAATCTTATCCTGCTCCGAGGCCTCACAACAGCAAGGCTCTCAATGGAAAGAAGTACACCGGCAAGGCCAAGAGGAAGTTGAAGTCTAAGAAAAGCAGGGAACATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGTCAAGCCTTGGGAGGTCACAAAAGATCCCATTTCATTGGGGGTTCTGAAGAAAACACTTTGGTTATTAAACAAGCTGCTCCTGTTGTTCCTTGCCTGATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1479 0.4192 MEERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNADADMFIKSDGVRKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSGGARANYEQGERFCKECGKGFPSLKALCGHMACHSEKEKRTIKFEDSDKKLKLVMDSQSDTETSAPSHPRRSKRMRVKTINLSDQPFSSSSSVFPLAHGSSPVSEVEQEQEEVARCLMMLSRDSSFKGRFASVTECSDNNSVIVEAKSSSPDTRIGVSNGNYNNFLSNNTCDLVDKKFLRFKDIKLKSVELGASDNSGSRYFKHSPKTKIVDSDVSNEEFKWPKVGKKSSKYSATTVKKLVMEDLDYDRTDETARKFDSRKRSNYDSFNHNLVGGSIKKVANGFGNEVNGNDTKDWKYDSLEGERDYGSYDSIEESHENSSETESYPAPRPHNSKALNGKKYTGKAKRKLKSKKSREHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02363 492 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 492 - -
Spst3g02363 492 ProSitePatterns Zinc finger C2H2 type domain signature. 439 459 IPR013087 -
Spst3g02363 492 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Spst3g02363 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 437 459 IPR013087 -
Spst3g02363 492 SUPERFAMILY beta-beta-alpha zinc fingers 92 459 IPR036236 -
Spst3g02363 492 MobiDBLite consensus disorder prediction 390 433 - -
Spst3g02363 492 Gene3D Classic Zinc Finger 1 53 - -
Spst3g02363 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Spst3g02363 492 SMART c2h2final6 437 459 IPR013087 -
Spst3g02363 492 SMART c2h2final6 6 28 IPR013087 -
Spst3g02363 492 SMART c2h2final6 91 113 IPR013087 -
Spst3g02363 492 Pfam C2H2-type zinc finger 437 459 - -
Spst3g02363 492 Pfam C2H2-type zinc finger 93 115 - -
Spst3g02363 492 Pfam C2H2-type zinc finger 6 30 - -
Spst3g02363 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Spst3g02363 492 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Spst3g02363 492 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02363 Spst-Chr3 67331264 67332742 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g02363 zf-C2H2_6 5.2e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02363 3 67331264 67332742 Spst3g02363 3 67331264 67332742 ECH