Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02320 ATGGCGAACCCAACACCCAAACCTAGTCCCACTCTCATCCTTCGTGTGATCCTACGTTGCTGGTTGTGTTCATCCCTTGCTATGGGAGCCACTTACAATGTGGTCAACTTTGGTGCCAAATCAGACGGTAAAACGGACTCATCCAAAGCGTTCCTCAACGCATGGGCCAAAGCTTGTGCTTCCTCCAACCCTGCCTCGGTTTACGTGCCGCAAGGGAGGTTCTTGCTCGGAAGTGCCACCTTCGGTGGGCAATGTCATAACAAAGCTCTCACCTTTACCATTGATGGCACTCTGGTGGCTCCTTCTGATTACAGGGTCATCGGAAACTCCGGTAACTGGTTGCAGTTCGAGAGTGTGAACGGGGTTTCCATTCGCGGCGGCGTGCTCGATGGCCAAGGCACTGCCTTGTGGAACTGCAAGAACTCCGGCAAAGGAAATTGCCCCACCGGTGCTACGACACTGGCTTTCACCAACGCGAATAACATAGCAGTTAGTGGGTTGACATCATTGAACAGTCAATTGTTCCACATAGTGTTCAATGGATGCCAGAATGTGAAGGTGCAAGGAGTGAAGGTCCTGGCAGATGGAAACAGTCCTAACACCGACGGTATCCATGTCCAAATGTCCTCCCATGTCACCATCCTCAACTCCAAAATTCGAACTGGGGATGATTGCATCTCCATTGGCCCTGGAACCACTAACTTGTGGATTGAAAACATTGCATGTGGACCAGGCCATGGAATAAGCATTGGGAGCTTGGGGAAAGATTTGAATGAAGCTGGTGTACAAAATGTGACAGTGAAAACGGTTACCTTCTCCGGGACTCAAAACGGTGTTAGAATCAAGACCTGGGGAAGACCCAGTAACGGATTTGTGAGGAACGTTCTTTTCCAAGACGCTATCATGGTCAATGTAGAAAATCCTGTTATAATTGACCAGAATTACTGCCCAGCTAACAAGGGCTGCCCCGGTCAGGCATCTGGAGTGAAAGTGAGTGATGTGACATACCAAGACATTCATGGAACATCTGCTACACAAGTTGCTGTGAAATTTGATTGCAGTTCCAAGTATCCATGCAGCGGGATAAGGTTGGAGGATGTGAAGCTCACATACAAGAACCAACGTGCTCTATCTTCCTGCAACCATGCTGGAGGAGCCTCGTTGGGTTCAGTTCAACCCCAGAGTTGCTTTTAG 1194 0.4925 MANPTPKPSPTLILRVILRCWLCSSLAMGATYNVVNFGAKSDGKTDSSKAFLNAWAKACASSNPASVYVPQGRFLLGSATFGGQCHNKALTFTIDGTLVAPSDYRVIGNSGNWLQFESVNGVSIRGGVLDGQGTALWNCKNSGKGNCPTGATTLAFTNANNIAVSGLTSLNSQLFHIVFNGCQNVKVQGVKVLADGNSPNTDGIHVQMSSHVTILNSKIRTGDDCISIGPGTTNLWIENIACGPGHGISIGSLGKDLNEAGVQNVTVKTVTFSGTQNGVRIKTWGRPSNGFVRNVLFQDAIMVNVENPVIIDQNYCPANKGCPGQASGVKVSDVTYQDIHGTSATQVAVKFDCSSKYPCSGIRLEDVKLTYKNQRALSSCNHAGGASLGSVQPQSCF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02320 397 SMART pbh1 232 252 IPR006626 -
Spst3g02320 397 SMART pbh1 182 208 IPR006626 -
Spst3g02320 397 SMART pbh1 262 283 IPR006626 -
Spst3g02320 397 SMART pbh1 326 366 IPR006626 -
Spst3g02320 397 SMART pbh1 209 230 IPR006626 -
Spst3g02320 397 Pfam Glycosyl hydrolases family 28 59 381 IPR000743 GO:0004650|GO:0005975
Spst3g02320 397 Gene3D - 22 395 IPR012334 -
Spst3g02320 397 PANTHER - 31 384 - -
Spst3g02320 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Spst3g02320 397 FunFam Polygalacturonase 7 22 396 - -
Spst3g02320 397 SUPERFAMILY Pectin lyase-like 16 397 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02320 Spst-Chr3 66637570 66639415 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02320 3 66637570 66639415 Spst3g02320 3 66637570 66639415 ECH