Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02315 ATGGACAGAAGCAGTTCCAGACGCAGAGGCCGTTCCCCTTACCGTGGCGGCAATGCTGGCCGTAATAGTCCCGGTGGCCGAGGCGGCAATGCTGGCCGTAACAGTTCCGGTGGCCGAGGCGGCAATGCTGGTCGTAGCATTTACCGCGGCCGTGACAGTTACGTTGGCCGTACAGGAAGGCCTTATCAACATCACCAGTTCAGTAGTGGCAATGAACAAGGGTCTCCTTCCGAACAACAACCACTACAGAGGTTAAACCCTTCTTCTCCTGGTGCATCTTCAGAATCTCACAATTCTCACCCTCAAACTGAGACTGAAACTGGAAATCAAAGACAAACTACTCATAATCCAGACGCAGGTTCTTTGAAGATATCAAAGGAGAATATCAGACCTATGCATAGGCCTGACAAAGGGGGAAGGGATAAAGTTGAAATAAGGAATCTCGAGGTGAACCATTTCCTTGTTGAGTTTGACGAAGGCAGAGTAATCTTCCACTACGATGTCGACGTGAAGGCCAGGGGTACCCCCAGTTGGCCTCAGAAAATTTCAAAGTTATATCTGTCGTTGATTCGGAAGAAGCTATTTTCCGATCACAGGCTACCGAGTTCGGCGTACGACGGCGAAAGGAACATCTTCAGCTCGGAGCCGTTGCCGGAAGAAACCTATGATGTGGACGTGTTCATTGATGGAGACGAAAGGCTCGTTGGCTACTCGGTCACTTTCAGACTCGTGAAGGTGCTTGAACTCCGCAAATTGAGAGATTACTTGAGTGGAAATGTTCTTTCGACTCCGAGAGATGTTTTACAGGGCTTGGATTTGGTAGTGAAAGAGAATCCCGCGCAGCGGTGTGATTCGTTTGGGCGCTGCTTCTTCCCCATGCATAATCCTAGAACTCCGAGAGACGTGATAATTCCAACTGAAGGGTTTCAGCAGAGTCTTAAGCCCACTTCTCAGGGCTTGTCCTTGTGCCTGGACTATTCCGTTTCGTCGTATGTTGGGAAGGATAAACCGGTGTTGGAGTTTCTGCTCGAACAAATTCCGAACTTAAATTTGAATCAGACCTCGACGTTCAAGAGCAAAGTTGAGACTCTACTTGTGGGGTTGAAAGTTAATGTGACCCACCGGAGGACGAAGCAAAAATACACTATTACCAGGTTGACACGCAGGGCTACGAAGGATATCTCATTCCCTGCTTTGGACTCTGAGGGACGGTATACTGGATGGACACCTTCTCTGGATGGCTTCTTTTTACAGAGGTACGGCAAGAAGATTCAACACGTAGACCTTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTGCCTATGGAGTTGTGTGTCTTGGTTAAGGATCAAAGATGCCCCAGAAAGAATTTATCGGACACAAATGCTGCCACAGAGTTGACACGTAAGGCAGTGATTCCTCCACCAATGAGGCGAGACAAAATAAGAGCTTTAGTAAAATCAAATGAAGGACCGTGTGGAGGTGGTGTTATTGAAAGTTTTGGAATGCGTGTGCACACTTCCCTGACAAATGTGAGCGGACGTATAATTCATCCCCCAGAATTGAAGATAGGTGATAGACGTGGTCACATTATTAGTCTGCCACTGAGTCCAGCGAAAACTTGGTGGAATCTAAATGATAGATCAATGGTGGAAGGCAAGCCACTTAAGTGTTGGGGCATTCTTTTCTTTTATAAGCATGGTAAACAAAAATTTAAAAGCGAACAGTTCATTGAAAATCTTACTAAAAGGTATACAGCTTTGGGCATTGGCATGGAGAAGCCCGCTTCGTATGAAGAATCTTGTATTTCGACACTTAGCAATTACGCTTCGCTGTTTGAATTACTTAAAAGAATTAATGATCAGGTTCGAGAGAAATGTGGACAACGGCTGCAGTTCCTTCTTTGTGTGATGGGCGAAAAACATTCAGGTTACAAGTGCCTCAAATGGATTGCTGAGACCAAAGTTGGGATACTGACACAATGCTGCTTGTTTTCTCATGCTAATAAAGGGGTTGAGAATTTTCTTTCAAATCTTGTCCTCAAGATAAATGCCAAAATTGGAGGAAGTAATGTAGAGCTCATGAATAGGCTCCCAAACTTTGACGGTGAAGGTCATGTTATGTTCATAGGGGCTGATGTTAATCATCCAGCTTCCCGGGACATCAACAGTCCATCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATAGCTATGCCACACGTGTTTGTGCTCAAGGTAATCGGGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCCATGACCTAGTTTCATATTACAATAGGGTGAACAAAGTCTGGCCAGAAAAAATTGTTATCTTTCGTGATGGCGTGAGCGAAAGTCAATTTCATATGGTTCTCACGGAGGAGTTGCAAGATTTGAAATCAGTGTTTCGTGATTCAAATTACTTCCCAACCATCACTCTTATTGTTGCACAAAAGAGACATCAAACTCGATTTTTTGACAAGAAGCGATTATCAAATTTGAATCCTGGAACAGTTGTTGACACAGAAGTAGTACATCCTTTTGAATTTGACTTTTACCTCTGTAGTCACCATGGGACGTCGGGTACATGCAAGCCCACTCACTATCATGTGTTATGGGATGAGCACAAGTTTACATCTGATGATTTGCAAAAACTGATATACCATATGTGCTTTACCTTTGCAAGGTGCACTGGACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGATCTTGCTGCATATAGAGGCCGGTTATACTATGAAGCAATGTATGAAATCCAACCTCCTGCCTCTTCCGCTACTGCATCTTCTTCCTCAGTTTCTACCCAAGGCTCAAGTATAACTCTGCTCCCTTTGCATTGGGACAAGCCGCTTCAAGTAGGTAGTAGTTTGCGCCTTAATCTTCAAACTGTCTTGTCCTTTGTTATAGTTGTAATTGAGTCGGACATTGTTGATGTTATTTTAGTCTGTTTTGGGTTAAATAACGGTGGAGATGGGGAGAGCTTGTCTACTGGTGTCTTTGACGCAAATGAATGGAATCTTTCTAGAGATGATCAGAGCCTTTAG 3090 0.4437 MDRSSSRRRGRSPYRGGNAGRNSPGGRGGNAGRNSSGGRGGNAGRSIYRGRDSYVGRTGRPYQHHQFSSGNEQGSPSEQQPLQRLNPSSPGASSESHNSHPQTETETGNQRQTTHNPDAGSLKISKENIRPMHRPDKGGRDKVEIRNLEVNHFLVEFDEGRVIFHYDVDVKARGTPSWPQKISKLYLSLIRKKLFSDHRLPSSAYDGERNIFSSEPLPEETYDVDVFIDGDERLVGYSVTFRLVKVLELRKLRDYLSGNVLSTPRDVLQGLDLVVKENPAQRCDSFGRCFFPMHNPRTPRDVIIPTEGFQQSLKPTSQGLSLCLDYSVSSYVGKDKPVLEFLLEQIPNLNLNQTSTFKSKVETLLVGLKVNVTHRRTKQKYTITRLTRRATKDISFPALDSEGRYTGWTPSLDGFFLQRYGKKIQHVDLPALDFGGNKMNYVPMELCVLVKDQRCPRKNLSDTNAATELTRKAVIPPPMRRDKIRALVKSNEGPCGGGVIESFGMRVHTSLTNVSGRIIHPPELKIGDRRGHIISLPLSPAKTWWNLNDRSMVEGKPLKCWGILFFYKHGKQKFKSEQFIENLTKRYTALGIGMEKPASYEESCISTLSNYASLFELLKRINDQVREKCGQRLQFLLCVMGEKHSGYKCLKWIAETKVGILTQCCLFSHANKGVENFLSNLVLKINAKIGGSNVELMNRLPNFDGEGHVMFIGADVNHPASRDINSPSIAAVVATVNWPAANSYATRVCAQGNRVEKILNFGRICHDLVSYYNRVNKVWPEKIVIFRDGVSESQFHMVLTEELQDLKSVFRDSNYFPTITLIVAQKRHQTRFFDKKRLSNLNPGTVVDTEVVHPFEFDFYLCSHHGTSGTCKPTHYHVLWDEHKFTSDDLQKLIYHMCFTFARCTGPVSLVPPVYYADLAAYRGRLYYEAMYEIQPPASSATASSSSVSTQGSSITLLPLHWDKPLQVGSSLRLNLQTVLSFVIVVIESDIVDVILVCFGLNNGGDGESLSTGVFDANEWNLSRDDQSL 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02315 1029 ProSiteProfiles PAZ domain profile. 336 451 IPR003100 GO:0005515
Spst3g02315 1029 Gene3D - 518 697 - -
Spst3g02315 1029 MobiDBLite consensus disorder prediction 62 121 - -
Spst3g02315 1029 Pfam Piwi domain 636 928 IPR003165 GO:0003676
Spst3g02315 1029 CDD Piwi_ago-like 499 928 IPR045246 -
Spst3g02315 1029 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 145 930 - -
Spst3g02315 1029 Pfam N-terminal domain of argonaute 147 274 IPR032474 -
Spst3g02315 1029 CDD PAZ_argonaute_like 337 450 - -
Spst3g02315 1029 MobiDBLite consensus disorder prediction 1 140 - -
Spst3g02315 1029 SUPERFAMILY Ribonuclease H-like 621 929 IPR012337 -
Spst3g02315 1029 Gene3D paz domain 331 456 - -
Spst3g02315 1029 ProSiteProfiles Piwi domain profile. 635 929 IPR003165 GO:0003676
Spst3g02315 1029 Pfam PAZ domain 344 469 IPR003100 GO:0005515
Spst3g02315 1029 Pfam Argonaute linker 1 domain 286 328 IPR014811 -
Spst3g02315 1029 SUPERFAMILY PAZ domain 334 490 IPR036085 GO:0005515
Spst3g02315 1029 SMART Piwi_a_2 635 929 IPR003165 GO:0003676
Spst3g02315 1029 SMART PAZ_2_a_3 336 468 IPR003100 GO:0005515
Spst3g02315 1029 Gene3D - 705 963 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02315 Spst-Chr3 66602701 66606761 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02315 3 66602701 66606761 Spst3g02315 3 66602701 66606761 ECH
Spst3g02315 3 66602701 66606761 Spst3g03753 3 87515267 87523205 PCT