Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02310 ATGGGGCACAACCAAAACCAGAGATCTCTGATCTACGCGTTCGTCTCTCGCGGCACCGTGATTCTAGCCGAGTACACGGAATTCAGCGGCAACTTCAACACCATCGCCTTCCAGTGCCTCCAGAAGCTCCCTGCCTCAAACAATAAATTCACCTACAACTGCGATGGCCACACCTTCAATTACCTCGTCGACAACGGATTCACGTATTGTGTTGTTGCGGATGAGTCAATTGGGAGACAGGTGCCTGTGGCTTTTCTGGAGCGCGTGAAGGATGATTTTGTTGCCAAATACGGCGGTGGGAAGGCGGCGACCGCCGCCGCCAACAGCCTGAACAAAGAATTCGGGTCCAAGTTGAAGGAGCATATGCAGTACTGTGTTGAGCATCCTGAAGAGATAAGCAAGCTTGCTAAGGTGAAAGCTCAGGTTTCTGAAGTAAAAGGTGTCATGATGGAGAACATTGAAAAGGTTCTGGACAGAGGGGAAAAGATAGAGCTTCTGGTAGACAAGACCGAAAATCTTCATCACCAGGCACAAGACTTCAGGAATTCTGGGACCAAGATCCGTAGAAAAATGTGGCTGCAAAACATGAAGATAAAGTTGATCGTGTTGGCAATTTTGATAGCCCTGATCCTGATAATAGTCCTCTCTGTTTGCCGTGGGTTCCATTGTGGAAAATAA 678 0.4823 MGHNQNQRSLIYAFVSRGTVILAEYTEFSGNFNTIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGFTYCVVADESIGRQVPVAFLERVKDDFVAKYGGGKAATAAANSLNKEFGSKLKEHMQYCVEHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILIIVLSVCRGFHCGK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02310 225 Pfam Regulated-SNARE-like domain 38 114 IPR010908 -
Spst3g02310 225 SMART Longin_2 35 117 IPR010908 -
Spst3g02310 225 SUPERFAMILY SNARE fusion complex 129 196 - -
Spst3g02310 225 Gene3D Longin domain 1 131 - -
Spst3g02310 225 CDD Longin 11 125 IPR010908 -
Spst3g02310 225 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 134 194 IPR042855 -
Spst3g02310 225 ProSitePatterns Synaptobrevin signature. 152 171 IPR001388 GO:0016020|GO:0016192
Spst3g02310 225 FunFam Vesicle-associated membrane protein 726 132 218 - -
Spst3g02310 225 PRINTS Synaptobrevin signature 139 158 IPR001388 GO:0016020|GO:0016192
Spst3g02310 225 PRINTS Synaptobrevin signature 195 214 IPR001388 GO:0016020|GO:0016192
Spst3g02310 225 PRINTS Synaptobrevin signature 159 178 IPR001388 GO:0016020|GO:0016192
Spst3g02310 225 PANTHER SNARE PROTEINS 7 219 - -
Spst3g02310 225 SUPERFAMILY SNARE-like 10 125 IPR011012 -
Spst3g02310 225 Pfam Synaptobrevin 133 218 IPR042855 -
Spst3g02310 225 Gene3D - 132 218 - -
Spst3g02310 225 FunFam Vesicle-associated membrane protein 722 4 131 - -
Spst3g02310 225 CDD R-SNARE 134 192 - -
Spst3g02310 225 ProSiteProfiles Longin domain profile. 14 118 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02310 Spst-Chr3 66527679 66532424 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02310 3 66527679 66532424 Spst3g02310 3 66527679 66532424 ECH