Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02271 ATGTCTGATTCATTTGGTAGTACCTTTCACTCTTCCACTCCAAACATCAGCCCCCATGCAGCCCCCAAAATCTCCACATTGTGCTCAATAGCCCAACCGTATTGTATTTGCACCCAGTGTAACCACGTCCTCGCCTTCAACCACCATGTTGGTAATGTAGCAGAGGAAGGGACAAATAACGCAGGGTCCCATGTCTCCCAGCAAAGCACAAGGTGGAGTCCAACGCCAGTTCAGTTACTCGTCCTTGAGGAGTTGTATAGGCAAGGAACTAAAACACCATCAGCTGAACAAATTCAACAAATAGCTTCACAGTTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGAGAGAGACAGAAGAGGCGTCGCAGGGAGATGGAGGAAAATAATGCTGCTTCTTCTAGTGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGATATAGCAGAAAAGGGATCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCATACAAGTTTTGAGGAGAAACATAGCAGAAAGGCAAGCTAAGTTGCAATTGCAAGATAATGTGGAAATGCCTTGTTTCCCTCCCACGACTATGGCAGCTCTTGCAACTTCACACAGAACACTTAACACGCAACTTTTAATCCCTCAAAGTTATAACGGAGAATGTTTAAGCTACTATGATGGAGAAAATGCAGATCCTCGAACCCTCAACCTATTTCCACATAAGAGGGATGACCAAGATAGCATTTGTCTTGCTGAGAGGAAATCTATGTTCTGTGCCAGTGCTTCCATGGACACGGATATCACCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 927 0.4531 MSDSFGSTFHSSTPNISPHAAPKISTLCSIAQPYCICTQCNHVLAFNHHVGNVAEEGTNNAGSHVSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSGHAEESAALDIAEKGSNGWTQFEERGIQVLRRNIAERQAKLQLQDNVEMPCFPPTTMAALATSHRTLNTQLLIPQSYNGECLSYYDGENADPRTLNLFPHKRDDQDSICLAERKSMFCASASMDTDITSNQFFEFLPLRN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02271 308 Gene3D - 69 136 - -
Spst3g02271 308 SMART HOX_1 67 134 IPR001356 GO:0003677
Spst3g02271 308 SUPERFAMILY Homeodomain-like 63 133 IPR009057 -
Spst3g02271 308 MobiDBLite consensus disorder prediction 127 150 - -
Spst3g02271 308 ProSiteProfiles 'Homeobox' domain profile. 65 130 IPR001356 GO:0003677
Spst3g02271 308 Coils Coil 126 146 - -
Spst3g02271 308 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 55 302 IPR044555 GO:0003700|GO:0099402
Spst3g02271 308 Pfam Homeodomain 69 129 IPR001356 GO:0003677
Spst3g02271 308 CDD homeodomain 70 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02271 Spst-Chr3 65699802 65701756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02271 69 308 Wox Gene Family AT3G18010 34.114 5.95e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Spst3g02271 Homeodomain 3.7e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02271 3 65699802 65701756 Spst3g02271 3 65699802 65701756 ECH