Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02258 ATGGCGACACAAGATTCCCAGTCAAACCGCGAAGAAGGTTTTAGTACCTCACCTGTCATGGCTCACCTCCTAAATGCTGTCGCTTCTGAAATCAAAAAACGAAACCCTTCTTTTAACCTCCAACCACGCCACTATTCCCTTCTTGAGCGCCACCTTCGATATCTTTTTCCCACTTTTCACACCCCAACGCATCCTCCTTATGCCTTGATGATAAGCAGGGCGATATTAGGGTTGAAAGAGGAGACGGGATCCACTAAGGAGGCAATATCGGAGTTCATTAAGAGGGAGTACAATGATTTACCGTGGGCTCATGGGAGGATTCTAAGTGTGCAATTGGAGAAGCTTTGTGAGATTGGGGAGCTTGAATTTGTTTCCGATTCGAGGTATGTGCTGAAGGTTGATGAGGAAGTGAAAGAACAATTTCAAGGTAACGAGAAGAAGAAGAGGAGAAGTATTAAACACTGGGTGGCAGAGAGAGATGAAGGTCAACAACGAGGTAGCGGTAGGGGGAGGCCCCCTAAACTGGTTCAGAACACAATCAACTATGAGGCACAATTACAAGACAAAGTTCAAGCTACACAACAGCATGTTCGAGCCAGAGGTTGTAGAAGGCGTCCTAAGCCAAACCATTATACAAACCAATTTGAGGAGCAGTTACAATCTCAAGGTTTGGTAAACTGTCCTAGTTCAGGGAGGAATGATAACTATAGTTTGGAGCAGATGCAGTTGATGGTACAAAGTCAAGGGAGGGATCATAAATTAGAGTCAGGAGAGGCAAAGTCACCTGCAGAGTTAAGGGTTGGGTTAGGAGAGGTCTCCCAGTCTAATGTTGAAGCAAACCAGAACCCTTGGTTGTTGATGCCAGTAGCACGTAAAGTTCAAGATTCCGAGCCAAAGGACAAAGAAGGTTCCAATACCTCGCCTGTCATGACTCACCTAGACGCCGTCGCTTCTAAAATCTACAAACGAAACCCTTCTTTTAACCTCCAACTGTGGCACTACTCCCTTCTCGAGCACCACCTCCGAAATCTTTCTCCCACTTTTCATAGTCTAATGCATCTCCTTACCCGTTGTCTTCAAATACTCACCGTGATGCAAGATTCTCAGCCAAACGAGGAAGAAGGTTTCAGTACCTCGCCTGTCATGACTCACCTCCTAGACAATGTTGCGTCTGAAATCAAGAAACGAAACCCTTCTTTTAACTTTCAACAGGGCCACTACTCCCGTCTTGAGTGTCACCTCCGAAATCTTTTTCCCACTTTTCACACCCCAACACACCTTCCTTATGCCTTGATGATACACAGGGCAATATCAGGGTTGGAAGAGGAGATTGGATCCACTAAGGAAGCAATATCGGAGTTTATTAAGAAGGAGTACAATGATTTACCGTGGGCTCATGGGAGGATTCTGAGTATGCAATTGGACAAGCTTTGTGAAATTGGGGAGATTGAACTTGTCTCGGATTCGAGATATGTGCTGAAGGTTGAGGACGAAGTGAATGAACAATTTGAGGATAGCGAGGAGAAGAAGAAGAGAAGTATTAAACACTGGGTGGCAGAGAGGGATGAAGGTCAGCAACAACATGGTCGAGGTAGAGGTAGGGAGAGATCTCCTAAACTGGTTCAGAACACAATCAAATATGAGGCACAACTACAGGACAAAGTTCAAGCTAGACCACAACATATTCGAGGTAGAGGTTGTGGAAGACCTACTAATCCAAATCATCATGCAAACCAATTTGAGGAGCAGTTACAATCTCAAGGTTTGGTAAACTCTCCTAGTTCAGGGAGGAATGATAACCATAGTTTGGAGCAGAAGCAGTTGAAGGTACAAAGTCAGGGGAGTGATCATAAAGCAGAGTCAAAAGAGCTTGATGGGCAGGCACAAGATCACTGCAAATTCAAGTACGCCACCAGGGAGATGATGGACTCAGCAGTCCACAACTCCCACATCCTAAAAATCCATCATTTCTTCTGCTTCTTGTGCTTATTTCAATGCCTGTCTGCTTCAAAATCAACTCATTCATTCCCCAAAGAAGCCCTTCCCACCAAGTATGGTTACCTTCCAATCACCTCCACTTCCACTTCTGCAATTTTCTACGCCTTCTATGAAGCCCAGAACTCCACTTTACCTCTCTCCCAAACCCCGTTTCTTATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATTGGCAACTTCTACGAACTTGGACCTTGGCGCGTCACCCAATCTCTCACCCTTCAACCCAACCCTGGTGCTTGGAATAGAATTTTTGGCCTTCTTTTTCTTGACAGTCCCATTGGAACTGGCTTCAGTGTGGCCTCAACTCCCGGAGAGATCCCAAAGGATCAAAACGGCGTTGCAAAGCATCTTTTTGCTGCCATAACTAGGTTTGTACAGCTTGACCCTCTTTTCAAGCATCGCCCTATTTATATTACTGGGGAAAGCTACGCTGGCAAGTATGTTCCTGCAATTGGGTATTACATTTTGGAGAAAAATGCACGGTTGCAGGTTTCTGAAAAAGTGAATCTGGCTGGTGTGGCAATTGGGGATGGGTTAACTGACCCCGAAACTCAAGTGGCTACTCATGCTGTGAATGCTTATTATGTTGGATTGATCAATGAGAGGCAAAAGAATGAGTTGGAGAAAGCTCAATTGGAAGCCGTTAGATTAGCCCAGAATGGGAATTGGAGTGAAGCAACTGATGCTAGAAGCGAAATCTTGAGAATGCTGGGAGAGATGACCGGGTTGGCTACTTTGTATGACTATACAAGGAAAGCTCCTTATATGGATGATTTGGTTGAACAATTCTTGAACATTGCTGAAGTGAAGAAGGCCCTGGGGATCAATGAATCTTTTGTGTATGAGATATGTAGTGATGTTGTTGGGGAAGTATTACAGGCTGATGTCATGAAAAGTGTAAAACATATGGTGGAATACTTGGCGAGGAGAAGCAGGGTGTTGCTATATCAAGGTCAGCATGATTTGAAGGATGGTGTGGTTCAATCAGAGGTTTGGGTGAAGACAATGAAATGGGAAGGGATTGTGGAGTTTCTGAATGCTGAAAGGAAGATATGGAAGGTGAATGGAGAGCTTGCAGGGTATGTACAAAAATGGAAGTCTCTCACCAATGTTGTGGTTTTGGGAGCTGGGCATCTTGTGCCTGCTGACCAGCCTCTAAATTCTCAAGCTATGATAGAGGACTGGGTTTTGGAAAGGGGTTTGTTTAGAAGGGTGTAG 3243 0.4502 MATQDSQSNREEGFSTSPVMAHLLNAVASEIKKRNPSFNLQPRHYSLLERHLRYLFPTFHTPTHPPYALMISRAILGLKEETGSTKEAISEFIKREYNDLPWAHGRILSVQLEKLCEIGELEFVSDSRYVLKVDEEVKEQFQGNEKKKRRSIKHWVAERDEGQQRGSGRGRPPKLVQNTINYEAQLQDKVQATQQHVRARGCRRRPKPNHYTNQFEEQLQSQGLVNCPSSGRNDNYSLEQMQLMVQSQGRDHKLESGEAKSPAELRVGLGEVSQSNVEANQNPWLLMPVARKVQDSEPKDKEGSNTSPVMTHLDAVASKIYKRNPSFNLQLWHYSLLEHHLRNLSPTFHSLMHLLTRCLQILTVMQDSQPNEEEGFSTSPVMTHLLDNVASEIKKRNPSFNFQQGHYSRLECHLRNLFPTFHTPTHLPYALMIHRAISGLEEEIGSTKEAISEFIKKEYNDLPWAHGRILSMQLDKLCEIGEIELVSDSRYVLKVEDEVNEQFEDSEEKKKRSIKHWVAERDEGQQQHGRGRGRERSPKLVQNTIKYEAQLQDKVQARPQHIRGRGCGRPTNPNHHANQFEEQLQSQGLVNSPSSGRNDNHSLEQKQLKVQSQGSDHKAESKELDGQAQDHCKFKYATREMMDSAVHNSHILKIHHFFCFLCLFQCLSASKSTHSFPKEALPTKYGYLPITSTSTSAIFYAFYEAQNSTLPLSQTPFLIWLQGGPGCSSMIGNFYELGPWRVTQSLTLQPNPGAWNRIFGLLFLDSPIGTGFSVASTPGEIPKDQNGVAKHLFAAITRFVQLDPLFKHRPIYITGESYAGKYVPAIGYYILEKNARLQVSEKVNLAGVAIGDGLTDPETQVATHAVNAYYVGLINERQKNELEKAQLEAVRLAQNGNWSEATDARSEILRMLGEMTGLATLYDYTRKAPYMDDLVEQFLNIAEVKKALGINESFVYEICSDVVGEVLQADVMKSVKHMVEYLARRSRVLLYQGQHDLKDGVVQSEVWVKTMKWEGIVEFLNAERKIWKVNGELAGYVQKWKSLTNVVVLGAGHLVPADQPLNSQAMIEDWVLERGLFRRV 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02258 1080 SUPERFAMILY alpha/beta-Hydrolases 683 1071 IPR029058 -
Spst3g02258 1080 MobiDBLite consensus disorder prediction 140 175 - -
Spst3g02258 1080 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 63 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g02258 1080 MobiDBLite consensus disorder prediction 502 576 - -
Spst3g02258 1080 SUPERFAMILY "Winged helix" DNA-binding domain 61 132 IPR036390 -
Spst3g02258 1080 MobiDBLite consensus disorder prediction 606 626 - -
Spst3g02258 1080 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 425 495 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g02258 1080 Gene3D - 422 515 IPR036388 -
Spst3g02258 1080 FunFam Carboxypeptidase 667 1078 - -
Spst3g02258 1080 Pfam linker histone H1 and H5 family 426 487 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g02258 1080 Pfam linker histone H1 and H5 family 64 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g02258 1080 ProSitePatterns Serine carboxypeptidases, serine active site. 813 820 IPR018202 GO:0004185
Spst3g02258 1080 PRINTS Carboxypeptidase C serine protease (S10) family signature 799 824 IPR001563 GO:0004185|GO:0006508
Spst3g02258 1080 PRINTS Carboxypeptidase C serine protease (S10) family signature 764 774 IPR001563 GO:0004185|GO:0006508
Spst3g02258 1080 PRINTS Carboxypeptidase C serine protease (S10) family signature 1043 1056 IPR001563 GO:0004185|GO:0006508
Spst3g02258 1080 PRINTS Carboxypeptidase C serine protease (S10) family signature 751 763 IPR001563 GO:0004185|GO:0006508
Spst3g02258 1080 Gene3D alpha/beta hydrolase 665 1076 IPR029058 -
Spst3g02258 1080 ProSitePatterns Serine carboxypeptidases, histidine active site. 1043 1060 IPR033124 GO:0004185
Spst3g02258 1080 Gene3D - 60 153 IPR036388 -
Spst3g02258 1080 Coils Coil 875 895 - -
Spst3g02258 1080 SMART h15plus2 61 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g02258 1080 SMART h15plus2 423 489 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g02258 1080 Pfam Serine carboxypeptidase 682 1071 IPR001563 GO:0004185|GO:0006508
Spst3g02258 1080 MobiDBLite consensus disorder prediction 611 626 - -
Spst3g02258 1080 MobiDBLite consensus disorder prediction 502 541 - -
Spst3g02258 1080 CDD H15 61 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Spst3g02258 1080 PANTHER HISTONE H1 395 600 - -
Spst3g02258 1080 SUPERFAMILY "Winged helix" DNA-binding domain 423 487 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02258 Spst-Chr3 65402593 65418241 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02258 970 1071 Calmodulin-binding Proteins AT2G22960 23.301 4.17e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02258 3 65402593 65418241 Spst3g02258 3 65402593 65418241 ECH