Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02251 ATGTTAATGAACGTTGTGCACGTGTCAGCATCTTGGGGCCACAAGGCCTTTGACTTGGACGACCACGGTCAGAAACCTACACCTCTTGATATACGTTTTTCCCATGGAAACCTCCTTTTGATTTTCTATGCTCCTTTTAGGATCCTTTGCTGCTTCTGTCTTCCTTTTCATGTGTGTCTCCTTCTGTTTCCCCACTTTACCTTTTTCTCTCTCCTTTTTCGCACAGATCCTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCATCGTCACCATATATCTTTTTCCACCCCCTTCATTATTTCCTGTGCGTCTTCTATGGCGGTTTTACCAAGTAGCTCCTCCACCTTGGAATTGACCATATGCATCCCTGGCTTTGCTTCTTCACCAACTCTTCTTCCATCATCATCATCTGTGAAAGAATTGGACATAAACCAAGTACCTCTAGAAGAAGATTGGATGGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGACACTCCCCGGAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACCCTAAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAGGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGTGAGTACCTGAAGAGGTGGTTCGGGTCACTGACAGAGCAAAACCGAAGGCTTCAGAGGGAAGTGGAGGAATTGAGGGCAATGAAGGTGGGCCCACCAACAGTAATTTCCCCACACTCTTCAGAGCCACTCCCAGCCTCCACACTAACCATGTGTCCCCGCTGTGAGCGCGTCACCACTACCGCCGACAAACCGCCCTCCGTCGCCGTCACTTTGTCCGCTAAAGTGCCTGCGCAATCCCGTCAACCTTCTGCTGCTTGTTGA 957 0.4848 MLMNVVHVSASWGHKAFDLDDHGQKPTPLDIRFSHGNLLLIFYAPFRILCCFCLPFHVCLLLFPHFTFFSLLFRTDPPSLLLLLLLLHRHHISFSTPFIISCASSMAVLPSSSSTLELTICIPGFASSPTLLPSSSSVKELDINQVPLEEDWMASNMEDEEESSNGDTPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSSEPLPASTLTMCPRCERVTTTADKPPSVAVTLSAKVPAQSRQPSAAC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02251 318 ProSitePatterns 'Homeobox' domain signature. 201 224 IPR017970 GO:0000981|GO:0006355
Spst3g02251 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 137 300 - -
Spst3g02251 318 SMART HOX_1 168 230 IPR001356 GO:0003677
Spst3g02251 318 SUPERFAMILY Homeodomain-like 156 227 IPR009057 -
Spst3g02251 318 Pfam Homeodomain 170 224 IPR001356 GO:0003677
Spst3g02251 318 CDD homeodomain 169 227 IPR001356 GO:0003677
Spst3g02251 318 Gene3D - 162 233 - -
Spst3g02251 318 FunFam Homeobox-leucine zipper protein 18 154 231 - -
Spst3g02251 318 ProSiteProfiles 'Homeobox' domain profile. 166 226 IPR001356 GO:0003677
Spst3g02251 318 SMART halz 226 269 IPR003106 GO:0006355|GO:0043565
Spst3g02251 318 Pfam Homeobox associated leucine zipper 226 260 IPR003106 GO:0006355|GO:0043565
Spst3g02251 318 Coils Coil 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02251 Spst-Chr3 65272748 65276236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02251 138 300 Homeobox Transcription Factor Family AT1G70920 63.095 4.95e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst3g02251 Homeodomain 7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02251 3 65272748 65276236 Spst3g02251 3 65272748 65276236 ECH