Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01914 ATGTTAGACAATAGTGGTTCTTCTGGTGCACCATCTTCCTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCTAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCCACCACCTTGCTAGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGAAGGCACAAGGTGCCATGGAAATTGCTCAAGAGGGAAACACAAGGGCAGAAGAAGAGGGTGTTTGTGTGTCCAGAACCAAGCTGTTTGCACCATGACCCTTGCCATGCCCTTGGGGATCTTGTGGGCATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGACAAGTGCTCCAAGGGTTATGCTGTTCAATCTGATTACAAGGCACATATCAAAACCTGTGGCACCCGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTTGAGAGTTTCATAGAACACCAAGATGCATGCACGGTCCGGCAGCACAGGCCAGAGTTGCAAGCACTGCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTTGCATAGCCCCACCATTGCAAGGACTTCCACTGCCAAAACCAGCTTCTGCTGATCAACCAGCAACAGTTTTATTAACTTCAGAGGTACACAATAACAAGTCCACCACCTCTCGTAACTTGGAACTTCAGCTCTTACCTTCCTCAATAAATTCTCAAGAAAAACGAAACCCAAAGGAAAACTATGGTTTGAAACTTTCAATAGGCTCATGTAGTAATGGCAAAGGGGATGAAGCAGAGAGAGTATGTTCAGAAGCACATGGGAGCCCACCTGAAAGGAATAACAATGTGAGTGACTATGCCACATCGGAAGTGGCGAGGTTGAAAGAGTTTGCAGGTGAGGAACTCAAGTTGGCCATGGCAGAAAAGGCTTACGCAGAAGAGGCAAGGAAAGAGGCCAAACGTCAAATAGAAATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGAAAACAAGCACAGTCTGAACTTGCAAAGGCTGAAGAGTTGAGAAAGCAAGCCATTAAGAAGATAAGTTCCACTGTTTTCGAAATAACATGCCAAAATTGCAGGCAACAGTTTCATTCTTCAGCTGTTGGGGTTCCATCAGAAGAGACCTCCATTGTGATGAGTTACATGTCTTCAGCCACCACAGAAGGAGAAGCAGAATGA 1293 0.4671 MLDNSGSSGAPSSSDAAFALSENGVANKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFCIAPPLQGLPLPKPASADQPATVLLTSEVHNNKSTTSRNLELQLLPSSINSQEKRNPKENYGLKLSIGSCSNGKGDEAERVCSEAHGSPPERNNNVSDYATSEVARLKEFAGEELKLAMAEKAYAEEARKEAKRQIEIAELEFENAKRIRKQAQSELAKAEELRKQAIKKISSTVFEITCQNCRQQFHSSAVGVPSEETSIVMSYMSSATTEGEAE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01914 430 Gene3D Classic Zinc Finger 35 100 - -
Spst3g01914 430 SMART c2h2final6 98 128 IPR013087 -
Spst3g01914 430 SMART c2h2final6 134 161 IPR013087 -
Spst3g01914 430 SMART c2h2final6 57 79 IPR013087 -
Spst3g01914 430 Coils Coil 329 384 - -
Spst3g01914 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Spst3g01914 430 MobiDBLite consensus disorder prediction 1 20 - -
Spst3g01914 430 FunFam protein indeterminate-domain 12-like 36 104 - -
Spst3g01914 430 Gene3D Classic Zinc Finger 119 196 - -
Spst3g01914 430 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Spst3g01914 430 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Spst3g01914 430 MobiDBLite consensus disorder prediction 1 46 - -
Spst3g01914 430 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Spst3g01914 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 394 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01914 Spst-Chr3 43744523 43746838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01914 22 430 C2H2 Transcription Factor Family AT2G01940 56.912 5.38e-153 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst3g01914 zf-C2H2 0.004 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01914 3 43744523 43746838 Spst3g01914 3 43744523 43746838 ECH