Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01861 ATGAGAACAAGGAGAGGAGCGTGTTATTCTAGAATAGTGTCAAGGATGTGTTCCGATGTCAGGATTGCCAAGAAAAACAAGGATCTACACATGCATATGCGTATGCATGTCGCTGGAGATTCCTTTATTTATAGCCGGAAAAGACAGAAGAAGACGCCGGAAAAAACTGTTACCGATTACGATTTTCTCGAGTCTTTACCGGATGACCTTGTCATCTCTATCTTCTGCAAGCTTAGTTCTACCGCCACCAAACCTTCCGATTATCTCAATGTTTTAATCACATGTAAGAGATTAAACAAGTTAGCACTCCATTCGCTTGTTTTATCCAGAGTCTCTCCCAGAGCTTTCACTATTAGAGCCAGAGATTGGTGCGATTCAGCGCACCGTTTCCTCAAACACTGTGCGGATGCCGGAAATGTTGAAGCTTGCTACACTTTAGGCATGATTCGGTTTTACTGTTTGCAAAACCGAGGGAGCGGCGCGTCGTTAATGGCGAAGGCCGCGATTAATTCTCACGCGCGTGCGCTATACTCGCTTGCCGTGATTCAGTTCAACGGCAGCGGCGGAACCAAAAGCGACAAGGACTTACGTGCCGGCGTGGCGCTTTGCGCGAGAGCGGCATTTCTCGGCCACGTGGACGCGCTGCGCGAGCTCGGCCACTGCCTGCAAGACGGTTACGGCGTGCGGCAGAACATAGCCGAGGGACGGCGGTTCCTCGTGCAGGCCAACGCACGGGAGCTCGCGGCCGTGTTGTCCACAAGCGCCGCCGCGCGCCACTGGCTGACGTGCAACCTGCAGCCGCAGCTCCGACAGGGGACCGGATCTCCGTTACTCAGCGATTTCGGATGCAACGTGCCGGTGCCTGAGGTGCATCCAGCCAGCCGGTTCATGGCGGAATGGTTCGCCGCTCGCGGCGGTTCGCCCGGACAGGGGTTGAGATTGTGTTCGCACGCGGGGTGCGGGAGGCCCGAGACGAGGAAGCACGAGTTTCGAAGGTGTTCTGTATGTGGCGCGGTGAATTACTGCTCACGCGCGTGCCAAGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAGTGCGCCCCGGTGGAGCGGTGGCTCGAGGAGGACGGAGAAGATGTCGGTGACGATGATAGTGACGGCGAGGTAATGGTTATGGCGGATAGTTAG 1167 0.5553 MRTRRGACYSRIVSRMCSDVRIAKKNKDLHMHMRMHVAGDSFIYSRKRQKKTPEKTVTDYDFLESLPDDLVISIFCKLSSTATKPSDYLNVLITCKRLNKLALHSLVLSRVSPRAFTIRARDWCDSAHRFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAINSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTSAAARHWLTCNLQPQLRQGTGSPLLSDFGCNVPVPEVHPASRFMAEWFAARGGSPGQGLRLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLEEDGEDVGDDDSDGEVMVMADS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01861 388 FunFam Predicted protein 307 364 - -
Spst3g01861 388 SUPERFAMILY F-box domain 50 123 IPR036047 GO:0005515
Spst3g01861 388 Gene3D - 308 363 - -
Spst3g01861 388 PANTHER MYND DOMAIN-CONTAINING 35 374 IPR044508 -
Spst3g01861 388 SUPERFAMILY HCP-like 123 243 - -
Spst3g01861 388 Pfam MYND finger 319 359 IPR002893 -
Spst3g01861 388 Gene3D Tetratricopeptide repeat domain 110 262 IPR011990 GO:0005515
Spst3g01861 388 MobiDBLite consensus disorder prediction 368 388 - -
Spst3g01861 388 ProSiteProfiles Zinc finger MYND-type profile. 317 359 IPR002893 -
Spst3g01861 388 SUPERFAMILY HIT/MYND zinc finger-like 314 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01861 Spst-Chr3 34113488 34114819 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01861 3 34113488 34114819 Spst3g01861 3 34113488 34114819 ECH