Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01740 ATGGCCCAAGTAGAAAGTGGCCAAGGTAGTGAAGGGATCAAGCTGTTTGGAGCAACGATTAGCTTGTATGGTAGAGAAAGTAAAGAGGATAAAAAAGTGAGTGAAGATGGGACAGAAGAGAAGAGACCTGATAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCTAGGCACTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGAGCCCTTCGCAACGTCCCTGTAGGGGCAGGTCGGCGAAAGGCCAAACCTTCCTGCCATGACCCGACAGGGTTTCTGGATGGTGGACTCGTCGTGTCCACTGTCCAACGACAATTTGGTTTGGAAGAGAGGTTAATCTTGGATGAATGGCATGTTGCCACCATGTCTCACGGTGATTTCCGGCAGTTTTTTCCGTCGTCTAAAAGACGGAGGATCAACTCAGGTGTTCAACGTCAACCTTTTGAGGATGAAAGTGAAAAGGGGTTTGTGATGATCCGGGAAATGACAGAAGATGGGAGTGAGATAGAAAGGAAGGAGGCTTGA 576 0.4861 MAQVESGQGSEGIKLFGATISLYGRESKEDKKVSEDGTEEKRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPSCHDPTGFLDGGLVVSTVQRQFGLEERLILDEWHVATMSHGDFRQFFPSSKRRRINSGVQRQPFEDESEKGFVMIREMTEDGSEIERKEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01740 191 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Spst3g01740 191 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Spst3g01740 191 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
Spst3g01740 191 PANTHER CYCLIC DOF FACTOR 2 30 102 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01740 Spst-Chr3 22648549 22649303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01740 8 159 C2C2-Dof Transcription Factor Family AT2G34140 56.548 4.36e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g01740 zf-Dof 4.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01740 - - vra:106779806 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01740 3 22648549 22649303 Spst3g01740 3 22648549 22649303 ECH