Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00809 ATGAGAACATCTCTGCAGTTTCTTTGGCCTCAGATCCTGTGTTTCCTGTTATTCACTTCTCAATATCAAGTTCACACAAAGTCCACCATTGAACCATGCAATTCCTCAGACTCGTGCCCCTCTCTCCTCTCTTATCTCTTGCCCTGGGACTCCAAAGTATCCGAAATCGCCACTCGTTTCCACGTAAACTTTTCTGATATCTTGGCCTCGAACTCTCTCTTCCCCATAACTTCATCAAGTGCGCACCAAATCCTCAGAGCCAACACGTTGGTGAAAATACCCATCTCGTGCTTTTGCGTGGATGGCATCCGAAGGTCCATGTCAACCATTTACACTGTTCATGCAGCAGACACACTGGCCTCCATATCAGAAGGTTATGGTGGGTTGGTTAGTGGTGAGCAAATCAAGAGTGTGAACAGCATCAATGCCACCAACCCCTTGACCAGTGGAGGCACCCTTGTTATTCCACTGCCATGCACATGTTTTAACAATGTTAACAATGGGGGAACCGCTGTTTACATGTCATATGTTGTGCAGAGAGGAGAGAGCCTCCGGAGCATAGCATCAAAGTTTGGTACAACTATTTCAGACTTGGAAACTGTAAATGAGTTTTGGGAAGCTGCGGTGGATCCCGGAGACATTCTATCTATTCCCATTGCAGCATGTTCATCAGCAACCTTGAACTGGTATGATGAGAGTATGATAGTTCCAAATGGCTCATATACATTAACTGCCACCAACTGCATCAAATGCAGTTGCGAACCAATGGATATCACGATGCGATGTGTTCCTTCTGGACTAGATGTTCCCTGCTATAATTTACGTTGCAAAGAATCCAATCTTATTATCGGTAATGAATGTGTGGAGCACTCAGCAACAGCTTGCAATGTGATCCAATGTGTTTACCGTGGCCACAAGGGTGGGAAAATTCTGAGTAGTATGAAGAACTCTTCTTACCTCAAGTGCTCTGGTAATTATGCTGATGATGATCCGTGTCATAGTGAAGCATCATGTTGGCCTTTGTCATCATATCCTGAAGATCCATTTGGAATGTCTCCAAACCCATCTCCCTCTTTGCCACTGCCAGTTTCTCAGGCTTCTCTGAGGACTCGTGCCTCCAATGGAAGGCTTGGTCAATTTTTAATCAATGTGCTGCCAATATTCTTATTGTTAAAGTTTATCCTTTAA 1188 0.4444 MRTSLQFLWPQILCFLLFTSQYQVHTKSTIEPCNSSDSCPSLLSYLLPWDSKVSEIATRFHVNFSDILASNSLFPITSSSAHQILRANTLVKIPISCFCVDGIRRSMSTIYTVHAADTLASISEGYGGLVSGEQIKSVNSINATNPLTSGGTLVIPLPCTCFNNVNNGGTAVYMSYVVQRGESLRSIASKFGTTISDLETVNEFWEAAVDPGDILSIPIAACSSATLNWYDESMIVPNGSYTLTATNCIKCSCEPMDITMRCVPSGLDVPCYNLRCKESNLIIGNECVEHSATACNVIQCVYRGHKGGKILSSMKNSSYLKCSGNYADDDPCHSEASCWPLSSYPEDPFGMSPNPSPSLPLPVSQASLRTRASNGRLGQFLINVLPIFLLLKFIL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00809 395 Gene3D LysM domain 164 227 IPR036779 -
Spst3g00809 395 CDD LysM 109 155 IPR018392 -
Spst3g00809 395 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
Spst3g00809 395 SUPERFAMILY LysM domain 174 218 IPR036779 -
Spst3g00809 395 ProSiteProfiles LysM domain profile. 109 155 IPR018392 -
Spst3g00809 395 Gene3D LysM domain 105 163 IPR036779 -
Spst3g00809 395 CDD LysM 175 217 IPR018392 -
Spst3g00809 395 SMART LysM_2 175 218 IPR018392 -
Spst3g00809 395 SMART LysM_2 110 156 IPR018392 -
Spst3g00809 395 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 323 - -
Spst3g00809 395 Pfam LysM domain 111 156 IPR018392 -
Spst3g00809 395 Pfam LysM domain 176 218 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00809 Spst-Chr3 11553501 11556309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00809 10 367 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 41.417 1.34e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00809 - - vra:106767878 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00809 3 11553501 11556309 Spst3g00809 3 11553501 11556309 ECH