Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00560 ATGGGTTTAAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAAGCTCAAGATTTGGAACTTCCAAAGCCTAATCTGATGAGGAAACAACAGCAGCAGCAAGCTCAGCCTTCTGAATCTTTGAAGTGCCCAAGATGTGACTCTTCCAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGGAATGTTCCAGTAGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAAATCTAACACACCAACACCGTCTTCCACCACTGCCACTACTACCCCCATCACAGCCACCCCTTCTACTTGCACTGGCACTGTCACGACCTCAATCGGCAACATGGATGCTATGTTAGGTAGTAGCCACGTGACAATTCAAACTCCTCTTGCAGATGATCAGAAAAACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAACAGAATCCGATGAACACAAGAGACTTAGACGGTAAAGATTTTGGTATTGGTATTGGTATTGGTATTGGTAATAATGGTATCTTCCCGAGTTCAACTTTACCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCAGTGTCAACCTCTCTGAGATCCTCCCATGTTTACAACTATGGGGAGGAGTTTAAAGCAGTGGAGGAACCAACCATCAACAGTACTACTGTAGTGCCTAGCACAGGTGGCACTAACACACAGCCATGGGAGATAGCGGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTATTGGAATTGGGACGACTTTGATTCATTGGTCTCAACTGATCTGAAAGATCCCTGGGATGATTCTGATATCAAACCCTGA 954 0.4539 MGLSSKQVSSSGLDWKQTLLEAQDLELPKPNLMRKQQQQQAQPSESLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSNTPTPSSTTATTTPITATPSTCTGTVTTSIGNMDAMLGSSHVTIQTPLADDQKNMASSLYQALIRPPPLLLQQNPMNTRDLDGKDFGIGIGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSHVYNYGEEFKAVEEPTINSTTVVPSTGGTNTQPWEIAATSGVGLGTSNYWNWDDFDSLVSTDLKDPWDDSDIKP 317
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00560 317 Pfam Dof domain, zinc finger 46 99 IPR003851 GO:0003677|GO:0006355
Spst3g00560 317 MobiDBLite consensus disorder prediction 26 48 - -
Spst3g00560 317 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Spst3g00560 317 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Spst3g00560 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 206 IPR045174 GO:0003700|GO:0006355
Spst3g00560 317 MobiDBLite consensus disorder prediction 32 48 - -
Spst3g00560 317 MobiDBLite consensus disorder prediction 85 123 - -
Spst3g00560 317 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst3g00560 Spst-Chr3 9174483 9175436 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00560 33 117 C2C2-Dof Transcription Factor Family AT5G60850 63.953 2.39e-31 117
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst3g00560 zf-Dof 1.7e-31 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00560 - - gmx:100818111 456.832
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00560 3 9174483 9175436 Spst6g00740 6 6693707 6694558 PCT