Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g00560 | ATGGGTTTAAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAAGCTCAAGATTTGGAACTTCCAAAGCCTAATCTGATGAGGAAACAACAGCAGCAGCAAGCTCAGCCTTCTGAATCTTTGAAGTGCCCAAGATGTGACTCTTCCAACACCAAATTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGGAATGTTCCAGTAGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAAATCTAACACACCAACACCGTCTTCCACCACTGCCACTACTACCCCCATCACAGCCACCCCTTCTACTTGCACTGGCACTGTCACGACCTCAATCGGCAACATGGATGCTATGTTAGGTAGTAGCCACGTGACAATTCAAACTCCTCTTGCAGATGATCAGAAAAACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAACAGAATCCGATGAACACAAGAGACTTAGACGGTAAAGATTTTGGTATTGGTATTGGTATTGGTATTGGTAATAATGGTATCTTCCCGAGTTCAACTTTACCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCAGTGTCAACCTCTCTGAGATCCTCCCATGTTTACAACTATGGGGAGGAGTTTAAAGCAGTGGAGGAACCAACCATCAACAGTACTACTGTAGTGCCTAGCACAGGTGGCACTAACACACAGCCATGGGAGATAGCGGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTATTGGAATTGGGACGACTTTGATTCATTGGTCTCAACTGATCTGAAAGATCCCTGGGATGATTCTGATATCAAACCCTGA | 954 | 0.4539 | MGLSSKQVSSSGLDWKQTLLEAQDLELPKPNLMRKQQQQQAQPSESLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSNTPTPSSTTATTTPITATPSTCTGTVTTSIGNMDAMLGSSHVTIQTPLADDQKNMASSLYQALIRPPPLLLQQNPMNTRDLDGKDFGIGIGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSHVYNYGEEFKAVEEPTINSTTVVPSTGGTNTQPWEIAATSGVGLGTSNYWNWDDFDSLVSTDLKDPWDDSDIKP | 317 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g00560 | 317 | Pfam | Dof domain, zinc finger | 46 | 99 | IPR003851 | GO:0003677|GO:0006355 | |
Spst3g00560 | 317 | MobiDBLite | consensus disorder prediction | 26 | 48 | - | - | |
Spst3g00560 | 317 | ProSiteProfiles | Zinc finger Dof-type profile. | 47 | 101 | IPR003851 | GO:0003677|GO:0006355 | |
Spst3g00560 | 317 | ProSitePatterns | Zinc finger Dof-type signature. | 49 | 85 | IPR003851 | GO:0003677|GO:0006355 | |
Spst3g00560 | 317 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 35 | 206 | IPR045174 | GO:0003700|GO:0006355 | |
Spst3g00560 | 317 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
Spst3g00560 | 317 | MobiDBLite | consensus disorder prediction | 85 | 123 | - | - | |
Spst3g00560 | 317 | MobiDBLite | consensus disorder prediction | 104 | 123 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g00560 | Spst-Chr3 | 9174483 | 9175436 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g00560 | 33 | 117 | C2C2-Dof Transcription Factor Family | AT5G60850 | 63.953 | 2.39e-31 | 117 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Spst3g00560 | zf-Dof | 1.7e-31 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g00560 | - | - | gmx:100818111 | 456.832 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst3g00560 | 3 | 9174483 | 9175436 | Spst6g00740 | 6 | 6693707 | 6694558 | PCT |