Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00180 ATGGCGCCGACCACCGGAGACCTCCAACTAACTTCCCCCGGCGCCGTGGAACATACCGACGACCTCGAAGACGTTCGCCTCCTCGATTCCTACGACACAAACGACGTAATCCACGATGAAACGAAACGGATTCAGGTCAGAATCACCGGGATGACCTGCGCTGCGTGTTCCAACTCCGTCGAAACGGCTCTCAGGTCCGTCAATGGCGTCACCGAGGCTTCCGTTGCTCTTCTCCAAAACAAAGCCGACGTCGTTTTCAATCCGAGCCTCGTCAAGGATGACGACATTAAGAATGCGATTGAAGACGCAGGTTTTGAGGCGGAGATTTTGCAGGATTCCGGTCCGGCGGCGGTCGGCGGCTCCGCCGCCGTTGTGGTGGGTCAGTTCACAATCGGCGGGATGACGTGTGCGGCGTGTGTGAATTCCGTTGAGGGCATTTTAAGGAACCTTAATGGAGTGAAAAGAGCGGTGGTGGCTTTGGCTACTTCATTGGGTGAGGTTGAGTATGATCCCAATGTGATTAGCAAAGATGACATTGTGGCGGCCATTGAAGATGCTGGTTTCGAAGGTTCGTTTGTGCAGAGTAATGGGCAGGACCGGATTGTGTTGGGGGTTGGTAGTGTGTACTCTCTGGTTGATGCTAAGGTTTTGGAAGGGATGCTCAGTGACATCAAAGGAGTAAGACAGTTCCGGTTTGACCCGGTGTTGAATGAGCTTGATGTGGTGTTTGACCCTGAAGTAATTAGTTCGAGGTCATTGGTGGATGGGATCCAGTTGGGAAGTAATGGCAAGTTTAGATTGCATGTTAGGAATCCTTACGCTAGAATGGGTTCCAAAGATGGCTCCGAAACCTCGACTATGTTTCGGCTTTTTATTTCCAGCCTGTTTCTCAGTATTCCTCTATTCTTCATTGGGGTAATCTGTCCTCATATTCCGTCGGTATACTCCTTGCTACTTTGGAGATGTGGGCCTTTTCTCATGGGTGATTGGCTGAAGTGGGCGTTGGTGAGTGTCATTCAATTTGTGATTGGGAAACGCTTCTATATAGCAGCTGGAAGAGCTCTGAGAAATGGTTCAACAAACATGGATGTGCTGGTTGCTTTGGGAACTACAGCCTCTTATGTTTATTCCGTTTGTGCTCTGCTGTATGGAGCCCTTGCAGGATTTTGGTCTCCAACATATTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTAGGAAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACATCTGATGCTATTAAGAAGCTAGTGGAACTTACCCCGCCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAGAGCTATTGAAGAAAGGGAAATAGATTCCTTACTCGTTCAACCTGGTGACACATTAAAAGTTCTTCCCGGTACGAAGATTCCAGCTGATGGTATTGTTACTTGGGGATCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCGATACCTGTATCGAAGGAGGTCAATGCATCTGTTATTGGAGGTACAATCAATATGCTTGGTGTCCTTCATATTCAAGCCACCAAAGTGGGATCTGATACGGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCTATTCAAAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACAGTTGTGGTTTTGTCATTATTGACACTACTGTGTTGGTATATAGCTGGGGCTCTTGGAGCATACCCAGAAAATTGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCAATATCTGTCGTGGTGATTGCTTGTCCATGTGCACTTGGTTTGGCAACACCAACAGCTGTCATGGTGGCAACAGGGGTTGGGGCCAACAATGGTGTGTTAATTAAAGGAGGAGACTCATTGGAAAGAGCTCAGATGGTGAAGTATGTCATATTTGATAAAACAGGCACACTAACTCAGGGGAAATCCACTGTAACTGCTGCTAAGGTATTCACAGGAATGGAACGCGGGCAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGCGAACACCCTCTGGGAAAAGCAATATTGCAATATGCCCACCATTTTCATTTCTTTGATGAGTGTTCTCCTACCAGTGGTACCAAGAGTGACGCTGGGGATTTCAAGTCAGGGTGGCTTTATGATGTCTCAGACTTCTCTGCTCTCCCAGGACGGGGTGTCCAGTGCTTTATAGATGGAAAGCGAATTTTGGTTGGTAACCGAAAGCTGCTGGAGGAAAATGGCATAGATATTTCTACAGAAGTGGAAAATTTTGTTGTAGAGCTTGAAGAAAGTGCAAAAACAGGGATACTGGTAGCATATGATGATGTATTAACTGGAGTCTTAGGGATTGCAGACCCACTAAAGAGAGAAGCTTCTGTTGTTGTAGAGGGCCTCCGGAAAATGGGAGTCGTACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCAAGCTGTTGCTAAGGAGGTTGGCATTGAAGATGTTAGGGCAGAGGTTATGCCAGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAGGATGGAAGTATAGTTGCAATGGTGGGTGATGGAATCAATGACTCTCCAGCACTAGCTGCTGCAGATGTTGGAATGGCAATTGGGGCTGGGACAGATGTTGCAATAGAAGCTGCTAACTATGTGCTGATGAGAGATAACTTGGAAGATGTGATCACCGCCATTGATCTTTCCAAAAAGACCTTCTTTCGTATTCGATTGAATTATGTATTCGCGATGGCATACAATGTTGTTGCTATACCGGTTGCTGCCGGAGTTCTCTTTCCTTCGTTGGGGATCCAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTATGTCATCTGTTAGTGTTGTATGCTCTTCTTTGCTTTTGAGAAGATATAAAAAACCCAAACTTACCACAATACTTGAAATAGTTGTAAATTAA 2985 0.4576 MAPTTGDLQLTSPGAVEHTDDLEDVRLLDSYDTNDVIHDETKRIQVRITGMTCAACSNSVETALRSVNGVTEASVALLQNKADVVFNPSLVKDDDIKNAIEDAGFEAEILQDSGPAAVGGSAAVVVGQFTIGGMTCAACVNSVEGILRNLNGVKRAVVALATSLGEVEYDPNVISKDDIVAAIEDAGFEGSFVQSNGQDRIVLGVGSVYSLVDAKVLEGMLSDIKGVRQFRFDPVLNELDVVFDPEVISSRSLVDGIQLGSNGKFRLHVRNPYARMGSKDGSETSTMFRLFISSLFLSIPLFFIGVICPHIPSVYSLLLWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALAGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPPTALLVVKDKGGRAIEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESIPVSKEVNASVIGGTINMLGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVVLSLLTLLCWYIAGALGAYPENWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVIFDKTGTLTQGKSTVTAAKVFTGMERGQFLTLVASAEASSEHPLGKAILQYAHHFHFFDECSPTSGTKSDAGDFKSGWLYDVSDFSALPGRGVQCFIDGKRILVGNRKLLEENGIDISTEVENFVVELEESAKTGILVAYDDVLTGVLGIADPLKREASVVVEGLRKMGVVPVMVTGDNWRTAQAVAKEVGIEDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKKTFFRIRLNYVFAMAYNVVAIPVAAGVLFPSLGIQLPPWVAGACMAMSSVSVVCSSLLLRRYKKPKLTTILEIVVN 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00180 994 FunFam Copper-exporting P-type ATPase 748 799 - -
Spst3g00180 994 Gene3D - 639 918 IPR023214 -
Spst3g00180 994 SUPERFAMILY Calcium ATPase, transmembrane domain M 378 950 IPR023298 -
Spst3g00180 994 Gene3D - 416 538 - -
Spst3g00180 994 NCBIfam copper ion binding protein 44 107 IPR006122 GO:0005507
Spst3g00180 994 NCBIfam copper ion binding protein 128 189 IPR006122 GO:0005507
Spst3g00180 994 PRINTS P-type cation-transporting ATPase superfamily signature 648 662 - -
Spst3g00180 994 PRINTS P-type cation-transporting ATPase superfamily signature 815 825 - -
Spst3g00180 994 PRINTS P-type cation-transporting ATPase superfamily signature 868 887 - -
Spst3g00180 994 PRINTS P-type cation-transporting ATPase superfamily signature 891 903 - -
Spst3g00180 994 PRINTS P-type cation-transporting ATPase superfamily signature 793 804 - -
Spst3g00180 994 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Spst3g00180 994 Pfam haloacid dehalogenase-like hydrolase 644 882 - -
Spst3g00180 994 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Spst3g00180 994 Gene3D - 127 192 - -
Spst3g00180 994 ProSitePatterns E1-E2 ATPases phosphorylation site. 650 656 IPR018303 -
Spst3g00180 994 NCBIfam HAD-IC family P-type ATPase 742 953 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g00180 994 NCBIfam HAD-IC family P-type ATPase 401 669 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst3g00180 994 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Spst3g00180 994 CDD HMA 128 189 IPR006121 GO:0046872
Spst3g00180 994 FunFam Copper-exporting P-type ATPase A 40 110 - -
Spst3g00180 994 FunFam Copper-transporting ATPase RAN1 655 747 - -
Spst3g00180 994 FunFam Copper-exporting P-type ATPase A 125 193 - -
Spst3g00180 994 Pfam E1-E2 ATPase 429 627 - -
Spst3g00180 994 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 22 990 - -
Spst3g00180 994 FunFam Copper-transporting ATPase 1, putative 416 538 - -
Spst3g00180 994 SUPERFAMILY HMA, heavy metal-associated domain 128 196 IPR036163 GO:0046872
Spst3g00180 994 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Spst3g00180 994 CDD HMA 45 108 IPR006121 GO:0046872
Spst3g00180 994 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Spst3g00180 994 Pfam Heavy-metal-associated domain 46 106 IPR006121 GO:0046872
Spst3g00180 994 Gene3D - 659 801 IPR023299 GO:0000166
Spst3g00180 994 SUPERFAMILY HMA, heavy metal-associated domain 38 112 IPR036163 GO:0046872
Spst3g00180 994 ProSiteProfiles Heavy-metal-associated domain profile. 42 108 IPR006121 GO:0046872
Spst3g00180 994 SFLD Haloacid Dehalogenase 630 919 - -
Spst3g00180 994 ProSitePatterns Heavy-metal-associated domain. 48 78 IPR017969 GO:0046872
Spst3g00180 994 CDD P-type_ATPase_Cu-like 289 965 - -
Spst3g00180 994 SFLD p-type atpase 630 919 IPR044492 -
Spst3g00180 994 Gene3D - 41 113 - -
Spst3g00180 994 PRINTS Copper-transporting ATPase 1 signature 69 92 - -
Spst3g00180 994 PRINTS Copper-transporting ATPase 1 signature 98 118 - -
Spst3g00180 994 PRINTS Copper-transporting ATPase 1 signature 43 68 - -
Spst3g00180 994 NCBIfam heavy metal translocating P-type ATPase 362 977 IPR027256 GO:0006812|GO:0016020|GO:0019829
Spst3g00180 994 SUPERFAMILY HAD-like 647 974 IPR036412 -
Spst3g00180 994 FunFam Probable copper-transporting ATPase HMA5 770 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00180 Spst-Chr3 3285009 3290539 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00180 3 3285009 3290539 Spst3g00180 3 3285009 3290539 ECH