Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00017 ATGGGTGCGGGGAAAGGGGTTATTTGGATGCCCAAAGTTATAGTGGTGGTAGCAATCGCGGTGGTAGCGAGTGTGGGCTTATCAGAGGCCCAACCGGAGGCCAAATTCAACTGCAACAGCGCGAATAACGCCACGTGTCGTGCTCTCGTAGGGTACTCTCACGCGAACGGCACCACCCTGGGCGACATCCAAACCCTCTTCAACGTGAAGCAACTTGTGGACATCCTGGGCGCCAACAACCTCCCAAGCAACACCTCAAAGCACCACGTGGTGGGGCCCAGCAAGGTTGTGAAGGTGCCGTTCCCGTGCAGGTGCAGCAACGAGACGGGACTCTCGGACGGGGTACCGCTTTATAAGATAAAAAGAGGGGACACGCTGTTCGACATAGCGACGACGACGTTTGGGGGATTTATGAAGTGGCAGCAGATCCAGGTGGCGAATAATATACCGGACCCGAATAACATCACTGCTGGGGACACGCTTTATATTCCTTTACCGTGTAGCTGCGATGAGGTGGATGGAAGCAGAGTGGTGCACTATGCGCACTTGGTGGCGCCGCAGAGCACGGTGGAGAGTATTGCTGAGCAGTTTGGAACCACCCAGCAAATCCTCCTCACTATCAATGGAATTTCTGACCCCAAAACGCTTCAGGCCGGTCAGATTCTTGATGTTCCCCTCAAAGCTTGTTCCTCGAGTGTGAAAAATGATTCATTGGACTATCCATTGCTTGTTGCAAATTCTACTTATGCCTATACTGCCAATGAATGCGTCAAATGCAAGTGTGACTCCAGCAACAACTACATGTTACAATGCCAGCCATCCCAACACAAACCGACTAACTGGTCCGTTTGTCCTTCTACCCAATGCTCAAGCAACGTCTTCATTGGCAACACCACTTCCTCTACAGATTCCTGCAATCGCGCAATCTGTGCCTATACCGGTTATACACTCCGCAATATCTCGGCGGAACTTGTAACGCAGAACATTTGTGCTGTGCCACCGAGTCCTTCAGGAGGATCTAGTGGTTCTGGTTCACAAGCGCCCAGGAGCACTTTGCAAGGCTCGCTTTGGAGTAATCTTTTCATTGTTATTCACTTTGTCCTATCTTTTGTCTTTGTTTTGTAG 1125 0.5093 MGAGKGVIWMPKVIVVVAIAVVASVGLSEAQPEAKFNCNSANNATCRALVGYSHANGTTLGDIQTLFNVKQLVDILGANNLPSNTSKHHVVGPSKVVKVPFPCRCSNETGLSDGVPLYKIKRGDTLFDIATTTFGGFMKWQQIQVANNIPDPNNITAGDTLYIPLPCSCDEVDGSRVVHYAHLVAPQSTVESIAEQFGTTQQILLTINGISDPKTLQAGQILDVPLKACSSSVKNDSLDYPLLVANSTYAYTANECVKCKCDSSNNYMLQCQPSQHKPTNWSVCPSTQCSSNVFIGNTTSSTDSCNRAICAYTGYTLRNISAELVTQNICAVPPSPSGGSSGSGSQAPRSTLQGSLWSNLFIVIHFVLSFVFVL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00017 374 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Spst3g00017 374 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Spst3g00017 374 CDD LysM 182 224 IPR018392 -
Spst3g00017 374 SUPERFAMILY LysM domain 180 225 IPR036779 -
Spst3g00017 374 CDD LysM 118 163 IPR018392 -
Spst3g00017 374 Gene3D LysM domain 171 237 IPR036779 -
Spst3g00017 374 SMART LysM_2 117 164 IPR018392 -
Spst3g00017 374 SMART LysM_2 181 225 IPR018392 -
Spst3g00017 374 Pfam LysM domain 118 164 IPR018392 -
Spst3g00017 374 Pfam LysM domain 185 225 IPR018392 -
Spst3g00017 374 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 331 - -
Spst3g00017 374 Gene3D LysM domain 117 170 IPR036779 -
Spst3g00017 374 SUPERFAMILY LysM domain 117 165 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00017 Spst-Chr3 552511 554922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00017 30 320 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 49.829 5.49e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00017 - - gmx:100804190 567.385