Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02572 ATGAAGATCCAGTGTGATGTGTGTCACAAAGAAGTGGCTTCCTTGTTCTGCCCCTCTGATGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCGGACAAACACAGACGCTTCTCTCTCCACCACCCTACCTCCAAAGACACCCCTCTCTGTGATATCTGTCATGAGAAACAAGCGTATGTATTCTGCAGAGAGGACAGAGCAATACTTTGTAGAGAGTGTGACGCTTCCATTCATGGAGTCAACGAACATACCAAGAATCACGATAGGTTTCTTCTCACGGGAATAAAGTTTGGTCCTACCATTCTTGAAAGAACAACAACCTCTAGTTTTAAAACAAACGCCGCACCTTGTTCAATCTCAAATGAAAACATTGATTCTTCTCGCTCGGTTGGATTGGCTTGTGATTCGGCTTCGGTTTCAGCAAGCAGCATTTCTGAGTACTTGATTGAGACCATTCCTGGTTACTGCATGGAAGACCTTTTAGATGCTTCATTTCCATCAAATGCTTTCTCTAAGGAATATGAACACCAATCAGCGTTTCAGAATCAAGATTTTAAAGTCAGCACAACTTCGAATCTTTATTCTCAGATTGATTCTTCAGTTGGAGTTATGGAAATGCCAAAAGCCAAAGCTTGTGAAGGATACTCAAATTGGGTTGATATTTCTGACTATGCAGCCTACAAAGTTCCCTCAATTAGTCCTCCTTTGGTCAAAAAATGTAAACGCTCTCGTTAA 759 0.4269 MKIQCDVCHKEVASLFCPSDEAALCHACDRTIHHANKLADKHRRFSLHHPTSKDTPLCDICHEKQAYVFCREDRAILCRECDASIHGVNEHTKNHDRFLLTGIKFGPTILERTTTSSFKTNAAPCSISNENIDSSRSVGLACDSASVSASSISEYLIETIPGYCMEDLLDASFPSNAFSKEYEHQSAFQNQDFKVSTTSNLYSQIDSSVGVMEMPKAKACEGYSNWVDISDYAAYKVPSISPPLVKKCKRSR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02572 252 CDD Bbox1_BBX-like 5 47 - -
Spst2g02572 252 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Spst2g02572 252 Gene3D Classic Zinc Finger 1 100 - -
Spst2g02572 252 CDD Bbox1_BBX-like 57 100 - -
Spst2g02572 252 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Spst2g02572 252 SMART bboxneu5 4 47 IPR000315 GO:0008270
Spst2g02572 252 SMART bboxneu5 53 100 IPR000315 GO:0008270
Spst2g02572 252 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 204 - -
Spst2g02572 252 FunFam B-box zinc finger protein 21 1 98 - -
Spst2g02572 252 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Spst2g02572 252 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02572 Spst-Chr2 25437653 25438682 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Spst2g02572 zf-B_box 1.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02572 2 25437653 25438682 Spst2g02572 2 25437653 25438682 ECH
Spst2g02572 2 25437653 25438682 Spst2g02593 2 25665880 25667933 ECH
Spst2g02572 2 25437653 25438682 Spst3g03819 3 88160147 88162744 ECH