Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02567 ATGTCCACGATGCAAGAACAAGGTATAGAAGTAGGGGTCAAGGGATTGAAGTGTCAAGAGTGTGGGAACCAAGCCAAAAAGGATTGTGCATACTCAAGGTGCAGAACCTGCTGCAAGAACAAAGGATTTAAGTGCCAAACTCATATCAGAAGCACTTGGATTCCTGTGGATAGAAGACGCCAGAAATTGGAGGAACAACTTCTCACCACTAATCTTCAGGGAGATATTCCTAAAAGGCACAAGCACAACCCATGCTTGGAGGAGTTCAAATTTCCATCTGTTACGAGTTCCATGGCGTTGTTCAGCTGTGTTCAGGTGCGTTCTATGGATGACACGGTTAATGAAATCGCGTATCAAACATCTGTGAACATTGGAGGACATGTGTTTAGTGGTCTTCTTTATGATCAAGGACCTGAACAAAGCTTCAATGCTAAGAGTGACAACAGCTCCATAGACCCTTTTGATCAACAACAACAAAATCTCAATCTCAGGAGTGTTTCATTCCACAGTCGTGATGGTGCAAGTGCAATGCCTCCACTCTCAGCCACTACTTCTCAGGAACCATTTTTTATTCCACACCATCCATTTTCCCTAGCTTCCTTCAGACCTGATCTGACATACTTGTCACACCCAAAATCTTAA 642 0.4346 MSTMQEQGIEVGVKGLKCQECGNQAKKDCAYSRCRTCCKNKGFKCQTHIRSTWIPVDRRRQKLEEQLLTTNLQGDIPKRHKHNPCLEEFKFPSVTSSMALFSCVQVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPEQSFNAKSDNSSIDPFDQQQQNLNLRSVSFHSRDGASAMPPLSATTSQEPFFIPHHPFSLASFRPDLTYLSHPKS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02567 213 NCBIfam LRP1 C-terminal domain 90 138 IPR006511 -
Spst2g02567 213 Pfam Domain of unknown function (DUF702) 15 139 - -
Spst2g02567 213 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Spst2g02567 213 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 175 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02567 Spst-Chr2 25389835 25390829 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst2g02567 DUF702 2.8e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02567 2 25389835 25390829 Spst2g02567 2 25389835 25390829 ECH
Spst2g02567 2 25389835 25390829 Spst2g00865 2 7305797 7307431 ECH
Spst9g00113 9 884696 886364 Spst2g02567 2 25389835 25390829 ECH
Spst2g02567 2 25389835 25390829 Spst9g00113 9 884696 886364 ECH