Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01949 ATGATAGATACTGATAGCAACCCTTCCTTGGTGCAAGTCGAAGTCCCCTGGATCGAATTTGAAACCCTTCATGAAGCATTCGTCGATTGTGGACCATATATGGCATGCCATGTTCTCAGACATTCACGAGACCTGAGACCAGAAAATAACCCATTGGATCTCAACAACTTTCCTGATGAGTGCTCTAGAGATGGTAAACAACTCCTCCAGGATAGTTCCTCATCTGCAGGGTTCAGGAGAAAGAAAGACAGCTTGAAGGATGATGAGAGTGAGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGGCTAG 360 0.4667 MIDTDSNPSLVQVEVPWIEFETLHEAFVDCGPYMACHVLRHSRDLRPENNPLDLNNFPDECSRDGKQLLQDSSSSAGFRRKKDSLKDDESEKVYECRFCSLKFCKSQALGGHMNRHRQG 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01949 119 Gene3D Classic Zinc Finger 71 119 - -
Spst2g01949 119 SUPERFAMILY beta-beta-alpha zinc fingers 90 117 IPR036236 -
Spst2g01949 119 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 119 IPR013087 -
Spst2g01949 119 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Spst2g01949 119 MobiDBLite consensus disorder prediction 64 90 - -
Spst2g01949 119 PANTHER ZINC FINGER PROTEIN JAGGED 69 119 IPR045320 GO:0003700
Spst2g01949 119 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01949 Spst-Chr2 18542979 18545016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01949 48 118 C2H2 Transcription Factor Family AT1G13400 52.055 9.44e-17 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst2g01949 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01949 2 18542979 18545016 Spst2g01949 2 18542979 18545016 ECH