Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01889 ATGGAGCAACCACGGCGCTGGCACGACGTGTTTTGGTTAGGGATATTTCTGATCCATTTGGTTGATTTGGGATTAGTTCTTGGGGTTTTAGGCCTCAACAGGTTCAAGCAAAAGAACAGGCTTGTCATTGACAAGTACACCTACCGGTTCATGGAGAATGAGGCTGGTTTGACGGAGGATTACTTGCCGCTTTACACGGTGGCCGGAAGAGTTGGAACCGCCCTTGGATGGAGTTGGTTGCTGCTATTAGGCTCACGCGCTACCCAGATGATGAAGGTGTCTGTGCACATCCTCACTACTTACCTTGCAGTGATCAGTGTTTTGTGTTTCTGGGCTGAGCAGTTTTTCTGGGGAGTTGCCTTTGCTATTGGAGCAGCACTGCAGTTTTTGTATGTGATTTCTGTCATAGACAGGTATGGTAATGATGAAAGTGGTCTTTGGGTCAGGAGAGTGGCATGTGCATTTATGCTTGTTGTGCTTTTATGGATGGCCTTGTGGTCATTTGGAGCTGCTGGTGTCGTGGCTTCAAGCATAGGTGATGGTGGACGCTGGTGGCTTCTTGTGGTCCTCTCTGTAAGCTTATTTTGGACAGGAGCTGTGTTTTGCAACACTGTGCATGTCATTGTGTCTGCCACAGTGGTTCGTGTTACTATCCATGGTGGTAGAGAGGCTGCGTCAATTCCTGGTAACCCCTTAATGAAATCTTTACAGTATGCTTTAACAACATCTTTTGGCAGCATTTGTTATGGATCATTATTCACGGCTGCAATTAGGACACTACGATGGGAGATCAGAGGAATCCGGTCAAAGATTGGCAACAATGAGTGTTTGCTTTGCTGTGTTGATTTCCTCTTCCATCTTGTGGAGACTCTCGTCCGTTTCTTTAACAAATATGCATATGTTCAGATTGCTGTTTATGGTAAAAGCTTTAACCGATCTGCTAGAGATGCATGGGAGCTATTCCAGTCAACTGGAGTTGAAGCAATTGTGGCCTATGATTGTTCAGGTGCTGTGCTTCTAATGGGAACCATTTTTGGGGGGCTGATAACTGGAACTTGCTCTGGTGTTTGGGCCTGGATTAAGTGGACTGACAGGGCTTTCATGATTGGGTCGACATCTATGCTCATGGGGATGGTATTGGTTGGAATAGCCATGGTTGTGGTGGAAAGTGCTGTTACATCCATATACATATGCTATGCAGAAGATCCCTCATTGATTCAGAGATGGGACACTGAGTTTTTCGACCACATGTCTGAGACACTGCGCCAACGACTTCAGCATAGGAGTTCACGTGCAAGGGAAGTTTTAACCCTCAATCACCTTGAGTCACGCTTTAGCATCTCTTTGTTTCATTTTGTGGCTATAGGGGGAAACGACACCAACCGGAACCCGACCCGGTTCTCTGATCTTGGAGATCTTCATTCCTGTGCCGTTTTTCATCAGGAAGATGTTGTTGATTTAAGCTCAAGTTCTATGTTTAGTATGAAGTCAAGCAATGTCGTTGGTAGCAGTAACATGCAATATGGAACATTGAGCACGGTGAATATTGGGTCTGCAGAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAGGACAGCAACTGATGTACCACAAAGGAGTGGCTATGACAACCTTGCCTTCAGGAAATGGTCATGTTGACAATTGGGCTGATTCAGGTATAGCAGATAATAGCCAACAAACTGACGATACCTCCACAGATATTGACACTGATGATAGAATCCAATGCAATAGAGTTAAGAACGGGTCACGTATAGTTGTGCACTCCAAGGATCAGACAAAGGTCAAACCTGAAGATCAGAAGACACTGCGTAGACTGGCTCAGAATCGGGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAATTGGAGAACAGCCGAGTCAAGCTTGCTCAATTAGAGTTAGAACTTCAACGAGCACGTCAGCAGGGCATATTTATCGCAACTCCAGGTGATCAAGGTCATTCAGCTGTCGGAAATGGTACCTATAAAGAAAAGCATTATTTCCTGCAGTTTCCAAGACATGATGCTTGTATTGGGGCCTTAGCATTTGACATAGACTATGCTCACTGGGTTGATGAGCACCAACGTTTGCTCGATGATCTAAGATTGGCTGTAAATTCTCAAATGAGTGATAACGAATTACATATCCTTGTGGAAGGTGTCATGGCACATTATAATGAGTTATTTAGGTTAAAGAGCATAGGGGCAAAGGCTGATATATTTCACATACTTTATGGAATGTGGAAAACACCAGTGGAAAGACGTTTTATGTGGCTTGGTGGATACCGGTCATCCGATCTTCTCAAGGTGATTGACCAATTTAGCACTTCCATGTCATTTGTGTTCACTTCTGTAGAAATACCTTTTGTTCACTTCCACTTGTTGTCTTTTGGGATTCAGATCATCAAGAACCACCTTGAGCCATTGACAGAGCAGCAGTTGGTGGGCATTTGTAATCTGCAACAATCTTCTCACCAGGCAGAGGATGCTTTAGATCAAGGCATGGAAGCATTGCAGCATTATCTTGTAGAAACACTTTCCTCCACCTCCCTAGGACCCACTGGTAGTGGAAATGTTGCTGATTACATGGGTCAAATGGCTCTTGCAATGGGCAAGCTTGCTGATCTGGAGAATTTCCTTCATCAGGCTGACCGCTTGAAGCAACACACTCTTCAACAGTTGCAACGAATTTTGACTACGCGTCAAACTGCCCGGGCCCTCCTTGTCCAAAGTGATTTCATTTCAAGACTCAGAGCACTTAGTTCATTATGGAACAAAGTCATGATGTTACATCTAGAAGTTGAAACTCTGGTGGAAATGCATATCAATATCAACCTCACCCTTTCAGCAGCAATGGCAGCAACAATGGCAGCATAG 2913 0.448 MEQPRRWHDVFWLGIFLIHLVDLGLVLGVLGLNRFKQKNRLVIDKYTYRFMENEAGLTEDYLPLYTVAGRVGTALGWSWLLLLGSRATQMMKVSVHILTTYLAVISVLCFWAEQFFWGVAFAIGAALQFLYVISVIDRYGNDESGLWVRRVACAFMLVVLLWMALWSFGAAGVVASSIGDGGRWWLLVVLSVSLFWTGAVFCNTVHVIVSATVVRVTIHGGREAASIPGNPLMKSLQYALTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKSFNRSARDAWELFQSTGVEAIVAYDCSGAVLLMGTIFGGLITGTCSGVWAWIKWTDRAFMIGSTSMLMGMVLVGIAMVVVESAVTSIYICYAEDPSLIQRWDTEFFDHMSETLRQRLQHRSSRAREVLTLNHLESRFSISLFHFVAIGGNDTNRNPTRFSDLGDLHSCAVFHQEDVVDLSSSSMFSMKSSNVVGSSNMQYGTLSTVNIGSAEIGSSGGGCMDTGQQLMYHKGVAMTTLPSGNGHVDNWADSGIADNSQQTDDTSTDIDTDDRIQCNRVKNGSRIVVHSKDQTKVKPEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRVKLAQLELELQRARQQGIFIATPGDQGHSAVGNGTYKEKHYFLQFPRHDACIGALAFDIDYAHWVDEHQRLLDDLRLAVNSQMSDNELHILVEGVMAHYNELFRLKSIGAKADIFHILYGMWKTPVERRFMWLGGYRSSDLLKVIDQFSTSMSFVFTSVEIPFVHFHLLSFGIQIIKNHLEPLTEQQLVGICNLQQSSHQAEDALDQGMEALQHYLVETLSSTSLGPTGSGNVADYMGQMALAMGKLADLENFLHQADRLKQHTLQQLQRILTTRQTARALLVQSDFISRLRALSSLWNKVMMLHLEVETLVEMHININLTLSAAMAATMAA 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01889 970 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 606 650 IPR004827 GO:0003700|GO:0006355
Spst2g01889 970 Pfam Seed dormancy control 710 783 IPR025422 GO:0006351|GO:0043565
Spst2g01889 970 Coils Coil 627 654 - -
Spst2g01889 970 SUPERFAMILY Leucine zipper domain 608 650 IPR046347 GO:0003700|GO:0006355
Spst2g01889 970 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 611 626 IPR004827 GO:0003700|GO:0006355
Spst2g01889 970 Pfam Plasma-membrane choline transporter 87 403 IPR007603 GO:0022857|GO:0055085
Spst2g01889 970 CDD bZIP_HBP1b-like 608 660 - -
Spst2g01889 970 FunFam BZIP family transcription factor 607 656 - -
Spst2g01889 970 Pfam bZIP transcription factor 607 639 IPR004827 GO:0003700|GO:0006355
Spst2g01889 970 ProSiteProfiles DOG1 domain profile. 692 939 IPR025422 GO:0006351|GO:0043565
Spst2g01889 970 Gene3D - 607 656 - -
Spst2g01889 970 SMART brlzneu 604 667 IPR004827 GO:0003700|GO:0006355
Spst2g01889 970 PANTHER TRANSCRIPTION FACTOR TGA9 550 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01889 Spst-Chr2 18035714 18048928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01889 479 936 bZIP Transcription Factor Family AT1G68640 51.380 3.97e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst2g01889 Choline_transpo 1e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01889 2 18035714 18048928 Spst2g01889 2 18035714 18048928 ECH