Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01874 ATGGGACCTCTCACTTATCTCTTTCCACTTTTTCTTCTCTTCTGCTTCTCTCCGTTGACACTCTCTCGAACCACACCGGATACCCCCAAAACGACACTCCTCGACGTCGTTTCCTCCCTTCAAAACGCGCACAATGCCGTCGCTTCAGCCCGCTACCACCCTCTCCAACGAGAACAAGAACCCTCGCTTCTTTCGTCGTTCGCTGTTCAACTACATTCCCGTGCCTCAATTCAAAAACCCTCTCACAGCGACTATAAATCCTTAACCCTATCGCGACTCGCGCGCGACTCCGCCCGTGTCAGAGCCTTGCAAACTCGTTTAGATCTTGCTCTGAATCGCGTCTCGAACTCGGATCTCCACCCGGCCGAGTCACGCTCTGAGTTCGAAGCCAACGCGCTCAAGGGCCCTATCGTCTCCGGAACGAGTCAGGGAAGCGGCGAGTACTTCCTCCGAGTCGGAATCGGAAAACCACCGAGTCAAGCCTACGTGGTTCTCGACACCGGAAGCGACGTGAGTTGGATCCAATGCGCGCCATGCTCCGAATGCTACCAACAATCCGACCCGATTTTTGACCCGAGTTCGTCCTCTTCCTACGCGCCAATCCACTGCGACGCGCCGCAGTGTAAAACGCTCGACCTCTCCGAGTGCCGCAACGGAACCTGCCTCTACGAAGTCTCCTACGGCGACGGATCCTACACCGTCGGCGAGTTCGCCACGGAGACCGTTACTCTCGGCGCGGCGACTGTCTCCGGCGTCGCCATCGGCTGCGGCCATAACAACGAAGGACTATTCGTCGGCGCCGCCGGTCTGCTGGGCCTCGGCGGCGGAAAGCTCTCATTTCCGGCGCAGGTCAACGCGACGTCATTTTCGTACTGTCTCGTGGACCGCGATTCCGACGCAGTTTCCACTCTCGAGTTCAACTCGCCGATGCCGCGCAACGCGGTCACCGCGCCGCTCATGCGGAACCCCGAGCTCGACACTTTCTACTACCTCGGCTTGAAAGGAATCAGCGTCGGGGGTGAGGCTCTCCCGATACCTGAGTCGAGCTTCGCAGTGGACGCCACAGGCGGCGGAGGCATCATCGTCGATTCCGGCACGGCGGTGACACGGCTACGGAGCGAGGTGTACGACGCGCTCCGCGACGCGTTCGTGGGGGGCGTGAAGGGGTTGCCGAAGGTGAACGGCGTGTCGCTGTTTGACACGTGCTACAACTTGTCGTCGAGGAACAGTGTAGAGGTGCCGACGATGTCGTTTCATTTTCCTGAGGGGAGGGAGTTACCGTTACCGGCGAGGAATTACCTGATACCGGTTGACTCAGAGGGGACGTTTTGCTTTGCGTTTGCACCAACATCGTCGTCGTTGTCAATCATTGGGAATGTGCAGCAACAAGGGACACGTGTCGGTTTCGATATCGGTAATTCGGTCGTTGGATTCTCTGCCAATAGTTGCTAG 1452 0.5813 MGPLTYLFPLFLLFCFSPLTLSRTTPDTPKTTLLDVVSSLQNAHNAVASARYHPLQREQEPSLLSSFAVQLHSRASIQKPSHSDYKSLTLSRLARDSARVRALQTRLDLALNRVSNSDLHPAESRSEFEANALKGPIVSGTSQGSGEYFLRVGIGKPPSQAYVVLDTGSDVSWIQCAPCSECYQQSDPIFDPSSSSSYAPIHCDAPQCKTLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGAATVSGVAIGCGHNNEGLFVGAAGLLGLGGGKLSFPAQVNATSFSYCLVDRDSDAVSTLEFNSPMPRNAVTAPLMRNPELDTFYYLGLKGISVGGEALPIPESSFAVDATGGGGIIVDSGTAVTRLRSEVYDALRDAFVGGVKGLPKVNGVSLFDTCYNLSSRNSVEVPTMSFHFPEGRELPLPARNYLIPVDSEGTFCFAFAPTSSSLSIIGNVQQQGTRVGFDIGNSVVGFSANSC 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01874 483 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 163 174 IPR001969 GO:0004190|GO:0006508
Spst2g01874 483 Pfam Xylanase inhibitor N-terminal 148 305 IPR032861 -
Spst2g01874 483 Gene3D Acid Proteases 121 306 IPR021109 -
Spst2g01874 483 ProSiteProfiles Peptidase family A1 domain profile. 148 479 IPR033121 -
Spst2g01874 483 PANTHER ASPARTYL PROTEASES 47 477 IPR001461 GO:0004190|GO:0006508
Spst2g01874 483 FunFam Aspartyl protease family protein 2 307 483 - -
Spst2g01874 483 SUPERFAMILY Acid proteases 141 483 IPR021109 -
Spst2g01874 483 Gene3D Acid Proteases 307 483 IPR021109 -
Spst2g01874 483 FunFam aspartyl protease family protein 2 125 306 - -
Spst2g01874 483 Pfam Xylanase inhibitor C-terminal 329 479 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01874 Spst-Chr2 17890218 17891669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01874 138 483 Miscellaneous Gene Families AT1G77480 25.393 1.43e-21 95.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01874 2 17890218 17891669 Spst2g01874 2 17890218 17891669 ECH