Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01852 ATGCCTCCGGTTCACTCATTCAACCCGGGTCCGGTTCACTACAACAACACCAACCCGGTTCGAGACCATCATGACCAAGCATTTCTTGTCCCTCCCACACCTACACCCTATGCAAGCTTCTTCAGCAGGAGGGTACCTTCCCTTCAGTTTGCATACGAGGGTCCCTCTTCTGATCACCACCATCTAAGAATTATATCTGACACCCTTGGACCCATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCTGAAAGAAGACGTAGAGAAAGAATCAACAACCATCTCGCCAAGCTTCGCAGTTTGCTGCCTAACACTACCAAGACAGATAAAGCTTCATTGTTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGCCAAACCTCCCTGATAGCGGAAACGAGTCCAGTGCCAACCGAGGTGGACGAGTTGACAGTGGATGCAGCTGACGAGGACGGAAAAATTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGGTCAGATCTCTTACCCGACCTCATCAAAACGTTGAAGGCCTTGAGGCTCAGAACCCTCAAAGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTAGTCATTACTGGTGATGAAGACAGTTCAAATACCAATGGAGAACAATGCATGCAGCAACAACAACAACAATACTGCATTAACTCGATACAAGAAGCACTCAAGGCAGTGATGGAGAAGAGTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGAACTAATAATATCAATATCCTTGAACAAAGGTCTTCATAA 879 0.4767 MPPVHSFNPGPVHYNNTNPVRDHHDQAFLVPPTPTPYASFFSRRVPSLQFAYEGPSSDHHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDAADEDGKIVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITSLGGRVKNVLVITGDEDSSNTNGEQCMQQQQQQYCINSIQEALKAVMEKSGGDESASGNVKRQRTNNINILEQRSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01852 292 FunFam transcription factor bHLH30 96 159 - -
Spst2g01852 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Spst2g01852 292 SMART finulus 107 156 IPR011598 GO:0046983
Spst2g01852 292 MobiDBLite consensus disorder prediction 1 20 - -
Spst2g01852 292 MobiDBLite consensus disorder prediction 266 292 - -
Spst2g01852 292 MobiDBLite consensus disorder prediction 272 292 - -
Spst2g01852 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 157 IPR036638 GO:0046983
Spst2g01852 292 CDD bHLH_AtAIG1_like 96 174 - -
Spst2g01852 292 Gene3D - 96 157 IPR036638 GO:0046983
Spst2g01852 292 Pfam Helix-loop-helix DNA-binding domain 104 150 IPR011598 GO:0046983
Spst2g01852 292 PANTHER TRANSCRIPTION FACTOR BHLH30 66 286 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01852 Spst-Chr2 17607013 17609864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01852 37 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 68.750 2.87e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01852 HLH 1.8e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01852 2 17607013 17609864 Spst2g01852 2 17607013 17609864 ECH