Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01840 ATGGCGTCTGAGAGCGCTTCTCGATCGAGTTCCGCTGCCGATTCATACATTGGGAGCTTGATAAGCTTGACCTCTAAGAGTGAGATCAGATACGAAGGCATTCTGTACAACATCAACACTGAAGAGTCCAGTATTGGCCTCAGAAATGTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCCACAAATTCCTCCTGGTGACAAGGTTTATGAGTATATACTTTTCCGCGGAACTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACCCCACAAGTTAACAATGACCCAGCTATTATTCAGTCTCACTATCCTCGCCCAGTCACAACATCTACAGCTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCTTAGCTCACATACCCCTCAGCTTGGACTTCCTGGGTCAAATTTTCAAGGGCCCGTGCCTTTGTATCAACCTGGAGGGAACATAGGATCATGGGGAGCTTCTCCGCCTGCTCCAAATACAAATGGTGGTAGAGTTGCTATGCCAATGTATTGGCAAGGATATTATGGTACCCCAAATGGGCTTCCTCATTTACACCAACAATCTCTTCTTCAACCCCCACCTGGTTTATCAATGCCTTCATCCATGCAGCAGCCAATGCAGTATCCCAATTTCAGTCCTTTACCTACTGTATCTTCTAATTTGCCAGAATTACCGTCATCTTTGCTGCCTGTGAGTACTAGTATCCCTAGTGTAACATCTGCTTCATTGCCTCCAGCACCATCTGCTTTGCCTCCTGCGCCTTCTGCTTTGCCTCCTGCAGTTTCTGCTTTACCTCATGCATCTTCTTCCTTATCTCCTGTACCCTCTGCAACACTTGCTTCTGAAATTTTATCAGTATCAGTAACAAACAAGGCACCCAATGTTTCAACTTCAGCAGCCAGTTTAGCTGCTAACTTACCTTCACTGACCAATCCTGGTCCTGATATAAATGCTTTAGTGCTACCGATCTCCAGTAAACCAAATGCAATTTCAGGTTCAAGTTTGCCCTATCAAACTATATCCCAGTTTTCTCCTGCAGTTGTTGGATCATCAACTTCTATCCATGCAGAAACATCAGCCCCTTCTCTGATAACCCCAGGTCAATTGTTGCAACCTGGACCAACTATAGTTTCTTCATCTCAGCCTACACAAGCATCTCATAAGGATGTTGAAGTGGTTCAGGTATCATCAACATCATCTCCTGAGCCATCTCTGTCGGTTTCTTCTGCAATTCAACCACCAATTCTGCCATTGCCAGTAGCCTCACGGCCTAGTCACAGGTCTGGTGGAGTTCCTATTCAAACTCATCATGGCTATAATTACAGAGGACGAGGAAGAGGAAGAGGAATTGGGGGTTTGCGCCCAGTCACAAAATTCACTGAAGATTTTGATTTCATGGCAATGAATGAGAAGTTCAAAAAGGATGAAGTTTGGGGTCATCTTGGTAAAAGCAAGTCTCATTCAAGAGACAAAGATGGGGAAGAAAATGCCTTTGATGAAGATTACCAAGACGAAGACGAAGAAGATTTGTCAAACTTTGAGGTTAAGCCTATTTACAACAAGGATGACTTTTTTGACTCGCTCTCTTCCAATGTGCATGATAATGCTTCCCAGAATGGAAGGACTCGATACTCTGAACAAATCAAGATTGATACTGAGACATTTGGTGATTTTGTGAGACACCGTGGTGGTCGTGGGGGTCGTGGCCCTGGCCGTGGTGGACGTACCCGGGGTGGTTATTATGGAAGAGGAGGAGGGTATGGCTACTTTGGTCGAGGGAGGGGCCGAGGCATGCCCAGTCGTAATTTGTAG 1842 0.4539 MASESASRSSSAADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGPQIPPGDKVYEYILFRGTDIKDLQVKSSPPVQPTPQVNNDPAIIQSHYPRPVTTSTALPSAVSGSLTDLSSHTPQLGLPGSNFQGPVPLYQPGGNIGSWGASPPAPNTNGGRVAMPMYWQGYYGTPNGLPHLHQQSLLQPPPGLSMPSSMQQPMQYPNFSPLPTVSSNLPELPSSLLPVSTSIPSVTSASLPPAPSALPPAPSALPPAVSALPHASSSLSPVPSATLASEILSVSVTNKAPNVSTSAASLAANLPSLTNPGPDINALVLPISSKPNAISGSSLPYQTISQFSPAVVGSSTSIHAETSAPSLITPGQLLQPGPTIVSSSQPTQASHKDVEVVQVSSTSSPEPSLSVSSAIQPPILPLPVASRPSHRSGGVPIQTHHGYNYRGRGRGRGIGGLRPVTKFTEDFDFMAMNEKFKKDEVWGHLGKSKSHSRDKDGEENAFDEDYQDEDEEDLSNFEVKPIYNKDDFFDSLSSNVHDNASQNGRTRYSEQIKIDTETFGDFVRHRGGRGGRGPGRGGRTRGGYYGRGGGYGYFGRGRGRGMPSRNL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01840 613 ProSiteProfiles TFG box profile. 549 569 IPR025768 -
Spst2g01840 613 ProSiteProfiles DFDF domain profile. 461 497 IPR025762 -
Spst2g01840 613 SMART FDF_2 467 569 IPR019050 -
Spst2g01840 613 MobiDBLite consensus disorder prediction 116 151 - -
Spst2g01840 613 ProSiteProfiles FFD box profile. 527 542 IPR025761 -
Spst2g01840 613 PANTHER SCD6 PROTEIN-RELATED 11 607 - -
Spst2g01840 613 MobiDBLite consensus disorder prediction 432 456 - -
Spst2g01840 613 MobiDBLite consensus disorder prediction 194 213 - -
Spst2g01840 613 CDD LSm14_N 16 87 IPR025609 -
Spst2g01840 613 MobiDBLite consensus disorder prediction 490 522 - -
Spst2g01840 613 MobiDBLite consensus disorder prediction 507 521 - -
Spst2g01840 613 MobiDBLite consensus disorder prediction 570 613 - -
Spst2g01840 613 Pfam FDF domain 468 566 IPR019050 -
Spst2g01840 613 Gene3D - 6 92 - -
Spst2g01840 613 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Spst2g01840 613 MobiDBLite consensus disorder prediction 116 142 - -
Spst2g01840 613 MobiDBLite consensus disorder prediction 490 506 - -
Spst2g01840 613 SMART LSM14_2 10 110 IPR025609 -
Spst2g01840 613 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723
Spst2g01840 613 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Spst2g01840 613 FunFam Trailer hitch, isoform C 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01840 Spst-Chr2 17488622 17494159 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01840 2 17488622 17494159 Spst2g01840 2 17488622 17494159 ECH