Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01631 ATGAACCACGACGACAAAGTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTAGACACAGTGACAGTGAAATGTGGCCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAATTCTCAAAACCAAAGCATTGATCACACCCTCAGTCTCCAGGGATTTTACAGTAATGCCAAAAAGGGACAAGCATCGTCTTCATCCTCCTCACCAACCACATCCAACGAGTCAGTGTCCCCAAAAGCAGCATCATTTGTGGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCTGCTTACAACCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCAAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCGAAAAATTGGGCAAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAAGCAAAGTTAATGCCGATTGA 522 0.4847 MNHDDKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSASKVNAD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01631 173 CDD HMG-box_SF 117 153 - -
Spst2g01631 173 SUPERFAMILY HMG-box 100 154 IPR036910 -
Spst2g01631 173 MobiDBLite consensus disorder prediction 82 103 - -
Spst2g01631 173 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Spst2g01631 173 PANTHER PROTEIN YABBY 6-RELATED 14 163 IPR006780 GO:0007275
Spst2g01631 173 FunFam Protein CRABS CLAW 89 160 - -
Spst2g01631 173 Gene3D High mobility group box domain 85 160 IPR036910 -
Spst2g01631 173 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01631 Spst-Chr2 15261521 15263667 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Spst2g01631 YABBY 1.8e-56 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01631 2 15261521 15263667 Spst2g01631 2 15261521 15263667 ECH