Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01305 ATGTCACCCGATGACACGCCACCTTCGAAGCCCGGCACAACAGCAACAACAGACCAAGAAACTCAAAGTTCCGGTGGCAGAAAAGGCTCCTCCACAAGGCCCCAAGAGCAAGGCCTGAAGTGTCCACGATGCGACTCACCGAACACAAAATTCTGCTACTACAATAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGTGCGTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAAGTCAAATCATCAAGGCTTTCATGTGACTCCAAAGACTCTGGTTCCTCCTCTTCAGACCTTGGTGGCCTCAAGTTCCTCCATGCTCTTTCTCCTTCCATGGACTTTCAACTTGGAGGGTTACCCTTCCCTAGGCTTCATCACCCTCCAGCAACTTATAATCACTTCTCCTCTTTTGGGGACACTTCTAGCGCCTCTTCCTGTTTCAACCTTGACCCTTCTCCTGGCAACACCTCAAGTTCTTTCGCTGCTCTTAATTACCCCTTCTCTTATAATGGTGCAATCCAAGGTATGAGCTCTATGAATGTTCACAGTTGTCACGCTTCTTCCATTGAGTCTTTGAGTTCCATAAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTGGCAATGTTATTTGGTGGAGATAACAGCCAGAAAGATCATAGTGGTAGTGGTGGGGTGTCATCAACGCTTAACCAGCTTGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCAGAATCTTGAGGTTTCAAAGCCAGGGATTTTCCCTGTTGGGAACTCTAGAAAAGAACATGGTCCAAGTGGGGACACACACACCCCCTCCACTGAATGGTTCTTTGGGAATTCTTTTGCCTCGGTTACTCCTACTCCTACTGCTGCCACTAGTGGTGGCCCAGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTCCATGCTTGGGGTGATGTGCCGCAGCAATATAGTGCTTTGCCCTAG 1023 0.4858 MSPDDTPPSKPGTTATTDQETQSSGGRKGSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGSSSSDLGGLKFLHALSPSMDFQLGGLPFPRLHHPPATYNHFSSFGDTSSASSCFNLDPSPGNTSSSFAALNYPFSYNGAIQGMSSMNVHSCHASSIESLSSINQDLHWKLQQQRLAMLFGGDNSQKDHSGSGGVSSTLNQLENQTQKPQPILFQNLEVSKPGIFPVGNSRKEHGPSGDTHTPSTEWFFGNSFASVTPTPTAATSGGPGNDNASNWSSGVHAWGDVPQQYSALP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01305 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 223 IPR045174 GO:0003700|GO:0006355
Spst2g01305 340 MobiDBLite consensus disorder prediction 7 37 - -
Spst2g01305 340 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Spst2g01305 340 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Spst2g01305 340 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Spst2g01305 340 MobiDBLite consensus disorder prediction 286 330 - -
Spst2g01305 340 MobiDBLite consensus disorder prediction 1 41 - -
Spst2g01305 340 MobiDBLite consensus disorder prediction 273 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01305 Spst-Chr2 11741073 11742095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01305 30 340 C2C2-Dof Transcription Factor Family AT5G65590 41.379 3.00e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst2g01305 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01305 - - gmx:100780729 562.377